Strain Fitness in Dechlorosoma suillum PS around Dsui_0667

Experiment: ALP with nitrite 0.3 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0666 and Dsui_0667 are separated by 305 nucleotidesDsui_0667 and Dsui_0668 are separated by 186 nucleotides Dsui_0666: Dsui_0666 - Na+/proline symporter, at 663,434 to 664,936 _0666 Dsui_0667: Dsui_0667 - hypothetical protein, at 665,242 to 665,448 _0667 Dsui_0668: Dsui_0668 - putative membrane protein, at 665,635 to 668,355 _0668 Position (kb) 665 666Strain fitness (log2 ratio) -3 -2 -1 0 1at 664.400 kb on + strand, within Dsui_0666at 664.408 kb on - strand, within Dsui_0666at 664.527 kb on + strand, within Dsui_0666at 664.527 kb on + strandat 664.535 kb on - strand, within Dsui_0666at 664.535 kb on - strand, within Dsui_0666at 664.612 kb on + strand, within Dsui_0666at 664.724 kb on + strand, within Dsui_0666at 664.732 kb on - strand, within Dsui_0666at 664.919 kb on + strandat 664.919 kb on + strandat 664.937 kb on + strandat 664.984 kb on + strandat 664.984 kb on + strandat 664.989 kb on + strandat 664.989 kb on + strandat 664.992 kb on - strandat 665.027 kb on - strandat 665.086 kb on + strandat 665.086 kb on + strandat 665.086 kb on + strandat 665.087 kb on + strandat 665.087 kb on + strandat 665.092 kb on + strandat 665.094 kb on - strandat 665.094 kb on - strandat 665.094 kb on - strandat 665.095 kb on - strandat 665.095 kb on - strandat 665.097 kb on + strandat 665.097 kb on + strandat 665.097 kb on + strandat 665.100 kb on - strandat 665.105 kb on - strandat 665.105 kb on - strandat 665.105 kb on - strandat 665.110 kb on + strandat 665.118 kb on - strandat 665.134 kb on + strandat 665.134 kb on + strandat 665.142 kb on - strandat 665.148 kb on - strandat 665.266 kb on + strand, within Dsui_0667at 665.266 kb on + strandat 665.266 kb on + strand, within Dsui_0667at 665.266 kb on + strand, within Dsui_0667at 665.313 kb on + strandat 665.313 kb on + strand, within Dsui_0667at 665.313 kb on + strand, within Dsui_0667at 665.330 kb on + strand, within Dsui_0667at 665.333 kb on - strand, within Dsui_0667at 665.371 kb on - strand, within Dsui_0667at 665.446 kb on + strandat 665.504 kb on - strandat 665.530 kb on - strandat 665.536 kb on - strandat 665.685 kb on - strandat 665.685 kb on - strandat 665.703 kb on - strandat 665.822 kb on - strandat 666.025 kb on - strand, within Dsui_0668at 666.025 kb on - strand, within Dsui_0668at 666.031 kb on - strand, within Dsui_0668at 666.110 kb on + strand, within Dsui_0668at 666.118 kb on - strandat 666.133 kb on + strand, within Dsui_0668at 666.252 kb on - strand, within Dsui_0668at 666.253 kb on + strand, within Dsui_0668at 666.283 kb on - strand, within Dsui_0668at 666.284 kb on - strand, within Dsui_0668at 666.284 kb on - strand, within Dsui_0668at 666.314 kb on - strand, within Dsui_0668at 666.314 kb on - strand, within Dsui_0668at 666.336 kb on - strand, within Dsui_0668

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrite 0.3 mM
remove
664,400 + Dsui_0666 0.64 -1.6
664,408 - Dsui_0666 0.65 -0.3
664,527 + Dsui_0666 0.73 +0.4
664,527 + +0.4
664,535 - Dsui_0666 0.73 +0.1
664,535 - Dsui_0666 0.73 -0.3
664,612 + Dsui_0666 0.78 +0.4
664,724 + Dsui_0666 0.86 +0.4
664,732 - Dsui_0666 0.86 -0.1
664,919 + -0.6
664,919 + -1.2
664,937 + +0.4
664,984 + +0.4
664,984 + +0.4
664,989 + +1.4
664,989 + -1.2
664,992 - -0.3
665,027 - +0.4
665,086 + -0.6
665,086 + +0.4
665,086 + -0.6
665,087 + +0.4
665,087 + +0.4
665,092 + -1.2
665,094 - +0.4
665,094 - -0.6
665,094 - -1.6
665,095 - -0.6
665,095 - -0.6
665,097 + -3.2
665,097 + -0.6
665,097 + -0.6
665,100 - -1.2
665,105 - +0.4
665,105 - -1.2
665,105 - +0.4
665,110 + -0.6
665,118 - -0.6
665,134 + -0.6
665,134 + +0.4
665,142 - -1.6
665,148 - -0.6
665,266 + Dsui_0667 0.12 -1.2
665,266 + -0.6
665,266 + Dsui_0667 0.12 +0.4
665,266 + Dsui_0667 0.12 +0.4
665,313 + -1.2
665,313 + Dsui_0667 0.34 -1.2
665,313 + Dsui_0667 0.34 -0.6
665,330 + Dsui_0667 0.43 -0.6
665,333 - Dsui_0667 0.44 -1.2
665,371 - Dsui_0667 0.62 +0.4
665,446 + +0.4
665,504 - -0.6
665,530 - -0.6
665,536 - -1.2
665,685 - -0.6
665,685 - +0.4
665,703 - -0.6
665,822 - -1.6
666,025 - Dsui_0668 0.14 -1.2
666,025 - Dsui_0668 0.14 -0.6
666,031 - Dsui_0668 0.15 +0.4
666,110 + Dsui_0668 0.17 +0.4
666,118 - +0.4
666,133 + Dsui_0668 0.18 -0.6
666,252 - Dsui_0668 0.23 -2.2
666,253 + Dsui_0668 0.23 -0.6
666,283 - Dsui_0668 0.24 +0.4
666,284 - Dsui_0668 0.24 -0.6
666,284 - Dsui_0668 0.24 +0.4
666,314 - Dsui_0668 0.25 +0.4
666,314 - Dsui_0668 0.25 +0.4
666,336 - Dsui_0668 0.26 -1.2

Or see this region's nucleotide sequence