Experiment: ALP with nitrite 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0633 and Dsui_0634 are separated by 105 nucleotides Dsui_0634 and Dsui_0635 are separated by 99 nucleotides
Dsui_0633: Dsui_0633 - transcriptional regulator, at 627,464 to 628,369
_0633
Dsui_0634: Dsui_0634 - putative permease, DMT superfamily, at 628,475 to 629,386
_0634
Dsui_0635: Dsui_0635 - periplasmic component of amino acid ABC-type transporter/signal transduction system, at 629,486 to 630,385
_0635
Position (kb) 628
629
630 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 627.497 kb on - strand at 627.627 kb on - strand, within Dsui_0633 at 627.673 kb on - strand, within Dsui_0633 at 627.741 kb on - strand, within Dsui_0633 at 627.883 kb on - strand, within Dsui_0633 at 627.943 kb on - strand, within Dsui_0633 at 627.988 kb on + strand, within Dsui_0633 at 627.996 kb on - strand, within Dsui_0633 at 627.996 kb on - strand, within Dsui_0633 at 627.996 kb on - strand, within Dsui_0633 at 627.999 kb on + strand, within Dsui_0633 at 628.004 kb on + strand, within Dsui_0633 at 628.012 kb on - strand, within Dsui_0633 at 628.012 kb on - strand, within Dsui_0633 at 628.075 kb on - strand, within Dsui_0633 at 628.135 kb on + strand, within Dsui_0633 at 628.215 kb on + strand, within Dsui_0633 at 628.340 kb on - strand at 628.578 kb on - strand, within Dsui_0634 at 628.642 kb on + strand, within Dsui_0634 at 628.685 kb on - strand, within Dsui_0634 at 628.701 kb on + strand, within Dsui_0634 at 628.701 kb on + strand, within Dsui_0634 at 628.776 kb on - strand, within Dsui_0634 at 628.796 kb on + strand, within Dsui_0634 at 628.806 kb on + strand, within Dsui_0634 at 628.819 kb on - strand, within Dsui_0634 at 628.845 kb on - strand, within Dsui_0634 at 628.982 kb on + strand, within Dsui_0634 at 628.987 kb on + strand, within Dsui_0634 at 628.990 kb on - strand, within Dsui_0634 at 628.990 kb on - strand, within Dsui_0634 at 629.188 kb on - strand, within Dsui_0634 at 629.359 kb on - strand at 629.386 kb on + strand at 629.412 kb on - strand at 629.462 kb on + strand at 629.467 kb on + strand at 629.503 kb on - strand at 629.503 kb on - strand at 629.552 kb on - strand at 629.571 kb on + strand at 629.579 kb on - strand, within Dsui_0635 at 629.598 kb on + strand, within Dsui_0635 at 629.604 kb on + strand, within Dsui_0635 at 629.611 kb on - strand, within Dsui_0635 at 629.679 kb on + strand, within Dsui_0635 at 629.728 kb on - strand, within Dsui_0635 at 629.792 kb on + strand, within Dsui_0635 at 629.806 kb on - strand at 629.808 kb on - strand, within Dsui_0635 at 629.896 kb on + strand, within Dsui_0635 at 630.095 kb on + strand, within Dsui_0635 at 630.108 kb on - strand, within Dsui_0635 at 630.121 kb on + strand, within Dsui_0635 at 630.121 kb on + strand, within Dsui_0635 at 630.135 kb on - strand, within Dsui_0635 at 630.171 kb on - strand, within Dsui_0635 at 630.173 kb on + strand, within Dsui_0635 at 630.173 kb on + strand, within Dsui_0635 at 630.230 kb on + strand, within Dsui_0635 at 630.241 kb on + strand, within Dsui_0635 at 630.257 kb on - strand, within Dsui_0635 at 630.276 kb on - strand, within Dsui_0635 at 630.382 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrite 0.3 mM remove 627,497 - +0.0 627,627 - Dsui_0633 0.18 -0.0 627,673 - Dsui_0633 0.23 +0.6 627,741 - Dsui_0633 0.31 -0.2 627,883 - Dsui_0633 0.46 -0.3 627,943 - Dsui_0633 0.53 -0.6 627,988 + Dsui_0633 0.58 -0.6 627,996 - Dsui_0633 0.59 -0.6 627,996 - Dsui_0633 0.59 -0.2 627,996 - Dsui_0633 0.59 -0.3 627,999 + Dsui_0633 0.59 +0.4 628,004 + Dsui_0633 0.60 +0.4 628,012 - Dsui_0633 0.60 -0.1 628,012 - Dsui_0633 0.60 -0.4 628,075 - Dsui_0633 0.67 -0.2 628,135 + Dsui_0633 0.74 -0.6 628,215 + Dsui_0633 0.83 -1.2 628,340 - -0.3 628,578 - Dsui_0634 0.11 +0.4 628,642 + Dsui_0634 0.18 -1.1 628,685 - Dsui_0634 0.23 -1.6 628,701 + Dsui_0634 0.25 -1.4 628,701 + Dsui_0634 0.25 +0.4 628,776 - Dsui_0634 0.33 -2.4 628,796 + Dsui_0634 0.35 -0.9 628,806 + Dsui_0634 0.36 -1.5 628,819 - Dsui_0634 0.38 -0.6 628,845 - Dsui_0634 0.41 +0.4 628,982 + Dsui_0634 0.56 +0.4 628,987 + Dsui_0634 0.56 -0.8 628,990 - Dsui_0634 0.56 -1.9 628,990 - Dsui_0634 0.56 +0.4 629,188 - Dsui_0634 0.78 -1.9 629,359 - +0.4 629,386 + -1.2 629,412 - -1.6 629,462 + -0.3 629,467 + -0.3 629,503 - -1.6 629,503 - -1.6 629,552 - +0.4 629,571 + -0.9 629,579 - Dsui_0635 0.10 +0.4 629,598 + Dsui_0635 0.12 -0.3 629,604 + Dsui_0635 0.13 -0.3 629,611 - Dsui_0635 0.14 -1.2 629,679 + Dsui_0635 0.21 -3.3 629,728 - Dsui_0635 0.27 +0.4 629,792 + Dsui_0635 0.34 -0.2 629,806 - +0.4 629,808 - Dsui_0635 0.36 -3.1 629,896 + Dsui_0635 0.46 -0.4 630,095 + Dsui_0635 0.68 -0.4 630,108 - Dsui_0635 0.69 +0.4 630,121 + Dsui_0635 0.71 -0.2 630,121 + Dsui_0635 0.71 -0.1 630,135 - Dsui_0635 0.72 -1.6 630,171 - Dsui_0635 0.76 +0.4 630,173 + Dsui_0635 0.76 -0.4 630,173 + Dsui_0635 0.76 -0.3 630,230 + Dsui_0635 0.83 -0.5 630,241 + Dsui_0635 0.84 -0.1 630,257 - Dsui_0635 0.86 +0.4 630,276 - Dsui_0635 0.88 +1.1 630,382 - -0.6
Or see this region's nucleotide sequence