Experiment: ALP with nitrite 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0585 and Dsui_0586 are separated by 164 nucleotides Dsui_0586 and Dsui_0587 are separated by 98 nucleotides Dsui_0587 and Dsui_0588 are separated by 6 nucleotides
Dsui_0585: Dsui_0585 - ABC-type metal ion transport system, periplasmic component/surface adhesin, at 582,510 to 583,403
_0585
Dsui_0586: Dsui_0586 - hypothetical protein, at 583,568 to 585,022
_0586
Dsui_0587: Dsui_0587 - hypothetical protein, at 585,121 to 585,429
_0587
Dsui_0588: Dsui_0588 - putative GTPase, G3E family, at 585,436 to 586,500
_0588
Position (kb) 583
584
585
586 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 582.570 kb on + strand at 582.688 kb on + strand at 582.781 kb on - strand at 582.835 kb on + strand, within Dsui_0585 at 582.835 kb on + strand, within Dsui_0585 at 582.858 kb on - strand, within Dsui_0585 at 583.021 kb on + strand, within Dsui_0585 at 583.044 kb on + strand, within Dsui_0585 at 583.070 kb on + strand at 583.158 kb on + strand, within Dsui_0585 at 583.166 kb on - strand, within Dsui_0585 at 583.225 kb on + strand at 583.276 kb on + strand at 583.305 kb on + strand, within Dsui_0585 at 583.313 kb on - strand, within Dsui_0585 at 583.318 kb on + strand at 583.364 kb on + strand at 583.374 kb on - strand at 583.437 kb on - strand at 583.597 kb on + strand at 583.599 kb on + strand at 583.607 kb on - strand at 583.649 kb on - strand at 583.695 kb on - strand at 583.734 kb on - strand, within Dsui_0586 at 583.800 kb on - strand, within Dsui_0586 at 583.807 kb on - strand, within Dsui_0586 at 584.094 kb on - strand, within Dsui_0586 at 584.237 kb on + strand, within Dsui_0586 at 584.311 kb on + strand at 584.365 kb on - strand, within Dsui_0586 at 584.418 kb on - strand, within Dsui_0586 at 584.444 kb on - strand, within Dsui_0586 at 584.461 kb on + strand at 584.499 kb on - strand at 584.574 kb on + strand, within Dsui_0586 at 584.582 kb on - strand, within Dsui_0586 at 584.584 kb on + strand at 584.592 kb on - strand, within Dsui_0586 at 584.618 kb on - strand, within Dsui_0586 at 584.628 kb on - strand, within Dsui_0586 at 584.657 kb on - strand, within Dsui_0586 at 584.696 kb on + strand, within Dsui_0586 at 584.729 kb on - strand, within Dsui_0586 at 584.731 kb on + strand, within Dsui_0586 at 585.011 kb on - strand at 585.024 kb on + strand at 585.032 kb on - strand at 585.095 kb on - strand at 585.209 kb on + strand, within Dsui_0587 at 585.226 kb on + strand, within Dsui_0587 at 585.228 kb on - strand, within Dsui_0587 at 585.602 kb on - strand, within Dsui_0588 at 585.659 kb on + strand at 585.774 kb on - strand, within Dsui_0588 at 586.019 kb on - strand, within Dsui_0588
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrite 0.3 mM remove 582,570 + +0.4 582,688 + +0.4 582,781 - +0.4 582,835 + Dsui_0585 0.36 -1.6 582,835 + Dsui_0585 0.36 +0.4 582,858 - Dsui_0585 0.39 +0.4 583,021 + Dsui_0585 0.57 -0.6 583,044 + Dsui_0585 0.60 +0.4 583,070 + +0.4 583,158 + Dsui_0585 0.72 +0.4 583,166 - Dsui_0585 0.73 -1.6 583,225 + +0.4 583,276 + +0.4 583,305 + Dsui_0585 0.89 -3.0 583,313 - Dsui_0585 0.90 -0.6 583,318 + -0.6 583,364 + +0.4 583,374 - +0.4 583,437 - -2.0 583,597 + -2.2 583,599 + -2.0 583,607 - -1.2 583,649 - -0.6 583,695 - +0.4 583,734 - Dsui_0586 0.11 -2.0 583,800 - Dsui_0586 0.16 -1.2 583,807 - Dsui_0586 0.16 -1.2 584,094 - Dsui_0586 0.36 -0.6 584,237 + Dsui_0586 0.46 -1.6 584,311 + +0.4 584,365 - Dsui_0586 0.55 +0.4 584,418 - Dsui_0586 0.58 -0.6 584,444 - Dsui_0586 0.60 -0.6 584,461 + +0.4 584,499 - +0.4 584,574 + Dsui_0586 0.69 +0.4 584,582 - Dsui_0586 0.70 +0.4 584,584 + +0.4 584,592 - Dsui_0586 0.70 +0.4 584,618 - Dsui_0586 0.72 -1.6 584,628 - Dsui_0586 0.73 +0.4 584,657 - Dsui_0586 0.75 -2.2 584,696 + Dsui_0586 0.78 -2.4 584,729 - Dsui_0586 0.80 -0.6 584,731 + Dsui_0586 0.80 -1.2 585,011 - +0.4 585,024 + -0.6 585,032 - -1.6 585,095 - -0.4 585,209 + Dsui_0587 0.28 +0.4 585,226 + Dsui_0587 0.34 -2.6 585,228 - Dsui_0587 0.35 -1.6 585,602 - Dsui_0588 0.16 -0.1 585,659 + -0.6 585,774 - Dsui_0588 0.32 -0.9 586,019 - Dsui_0588 0.55 -0.4
Or see this region's nucleotide sequence