Experiment: ALP with nitrite 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0473 and Dsui_0474 are separated by 83 nucleotides Dsui_0474 and Dsui_0475 are separated by 107 nucleotides Dsui_0475 and Dsui_0476 are separated by 45 nucleotides Dsui_0476 and Dsui_0477 are separated by 115 nucleotides
Dsui_0473: Dsui_0473 - adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase, at 480,077 to 480,655
_0473
Dsui_0474: Dsui_0474 - universal stress protein UspA-like protein, at 480,739 to 481,191
_0474
Dsui_0475: Dsui_0475 - PilZ domain-containing protein, at 481,299 to 481,670
_0475
Dsui_0476: Dsui_0476 - organic radical activating enzyme, at 481,716 to 482,363
_0476
Dsui_0477: Dsui_0477 - tol-pal system protein YbgF, at 482,479 to 483,255
_0477
Position (kb) 481
482 Strain fitness (log2 ratio) -2
-1
0
1 at 480.342 kb on + strand, within Dsui_0473 at 480.409 kb on + strand, within Dsui_0473 at 480.468 kb on - strand, within Dsui_0473 at 480.489 kb on + strand, within Dsui_0473 at 480.500 kb on + strand, within Dsui_0473 at 480.556 kb on - strand, within Dsui_0473 at 480.639 kb on - strand at 480.834 kb on + strand, within Dsui_0474 at 480.888 kb on - strand, within Dsui_0474 at 481.163 kb on + strand at 481.171 kb on - strand at 481.190 kb on - strand at 481.199 kb on + strand at 481.233 kb on + strand at 481.233 kb on + strand at 481.233 kb on + strand at 481.309 kb on - strand at 481.382 kb on + strand at 481.449 kb on - strand, within Dsui_0475 at 481.459 kb on + strand, within Dsui_0475 at 481.477 kb on + strand, within Dsui_0475 at 481.477 kb on + strand, within Dsui_0475 at 481.485 kb on + strand, within Dsui_0475 at 481.611 kb on + strand, within Dsui_0475 at 481.700 kb on + strand at 481.822 kb on - strand, within Dsui_0476 at 482.045 kb on + strand, within Dsui_0476 at 482.121 kb on + strand, within Dsui_0476 at 482.135 kb on - strand, within Dsui_0476 at 482.179 kb on + strand, within Dsui_0476 at 482.284 kb on + strand at 482.302 kb on - strand at 482.306 kb on + strand at 482.575 kb on - strand, within Dsui_0477
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrite 0.3 mM remove 480,342 + Dsui_0473 0.46 -0.8 480,409 + Dsui_0473 0.57 -0.2 480,468 - Dsui_0473 0.68 -1.9 480,489 + Dsui_0473 0.71 +0.9 480,500 + Dsui_0473 0.73 -0.1 480,556 - Dsui_0473 0.83 -1.2 480,639 - +0.4 480,834 + Dsui_0474 0.21 +0.2 480,888 - Dsui_0474 0.33 -1.9 481,163 + +0.3 481,171 - -1.2 481,190 - -1.9 481,199 + -0.0 481,233 + -0.1 481,233 + +0.2 481,233 + -0.0 481,309 - -0.4 481,382 + +0.4 481,449 - Dsui_0475 0.40 -0.1 481,459 + Dsui_0475 0.43 -2.0 481,477 + Dsui_0475 0.48 -1.0 481,477 + Dsui_0475 0.48 -1.6 481,485 + Dsui_0475 0.50 -0.7 481,611 + Dsui_0475 0.84 -0.9 481,700 + -1.2 481,822 - Dsui_0476 0.16 -1.5 482,045 + Dsui_0476 0.51 +0.4 482,121 + Dsui_0476 0.62 -0.6 482,135 - Dsui_0476 0.65 -0.9 482,179 + Dsui_0476 0.71 -2.2 482,284 + +0.4 482,302 - -0.9 482,306 + +0.4 482,575 - Dsui_0477 0.12 -1.7
Or see this region's nucleotide sequence