Strain Fitness in Dechlorosoma suillum PS around Dsui_0379

Experiment: ALP with nitrite 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0378 and Dsui_0379 are separated by 257 nucleotidesDsui_0379 and Dsui_0380 are separated by 270 nucleotides Dsui_0378: Dsui_0378 - FAD/FMN-dependent dehydrogenase, at 374,343 to 375,740 _0378 Dsui_0379: Dsui_0379 - indolepyruvate ferredoxin oxidreductase, alpha/beta subunit, at 375,998 to 379,549 _0379 Dsui_0380: Dsui_0380 - hypothetical protein, at 379,820 to 380,632 _0380 Position (kb) 375 376 377 378 379 380Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 375.070 kb on - strand, within Dsui_0378at 375.070 kb on - strand, within Dsui_0378at 375.078 kb on - strand, within Dsui_0378at 375.080 kb on + strand, within Dsui_0378at 375.156 kb on - strand, within Dsui_0378at 375.197 kb on + strand, within Dsui_0378at 375.266 kb on + strand, within Dsui_0378at 375.341 kb on + strand, within Dsui_0378at 375.355 kb on - strand, within Dsui_0378at 375.388 kb on + strand, within Dsui_0378at 375.466 kb on - strand, within Dsui_0378at 375.604 kb on + strandat 375.631 kb on - strandat 375.668 kb on - strandat 375.673 kb on + strandat 375.674 kb on + strandat 375.681 kb on - strandat 375.684 kb on + strandat 375.692 kb on - strandat 375.694 kb on + strandat 375.694 kb on + strandat 375.748 kb on + strandat 375.841 kb on + strandat 375.894 kb on + strandat 375.997 kb on - strandat 376.030 kb on + strandat 376.057 kb on + strandat 376.062 kb on - strandat 376.067 kb on + strandat 376.103 kb on - strandat 376.150 kb on + strandat 376.150 kb on + strandat 376.150 kb on - strandat 376.204 kb on + strandat 376.207 kb on - strandat 376.208 kb on - strandat 376.212 kb on - strandat 376.214 kb on - strandat 376.231 kb on - strandat 376.268 kb on - strandat 376.336 kb on + strandat 376.387 kb on + strand, within Dsui_0379at 376.537 kb on + strandat 376.550 kb on + strand, within Dsui_0379at 376.550 kb on + strand, within Dsui_0379at 376.608 kb on + strand, within Dsui_0379at 376.616 kb on - strand, within Dsui_0379at 376.640 kb on + strand, within Dsui_0379at 376.666 kb on - strand, within Dsui_0379at 376.684 kb on - strand, within Dsui_0379at 376.684 kb on - strand, within Dsui_0379at 376.754 kb on + strand, within Dsui_0379at 376.783 kb on + strand, within Dsui_0379at 376.887 kb on - strandat 377.003 kb on - strand, within Dsui_0379at 377.040 kb on + strand, within Dsui_0379at 377.068 kb on + strand, within Dsui_0379at 377.107 kb on + strandat 377.162 kb on + strand, within Dsui_0379at 377.163 kb on - strandat 377.215 kb on - strandat 377.299 kb on + strand, within Dsui_0379at 377.354 kb on + strand, within Dsui_0379at 377.375 kb on + strand, within Dsui_0379at 377.403 kb on - strand, within Dsui_0379at 377.474 kb on - strand, within Dsui_0379at 377.511 kb on + strand, within Dsui_0379at 377.539 kb on + strand, within Dsui_0379at 377.551 kb on + strand, within Dsui_0379at 377.574 kb on + strand, within Dsui_0379at 377.622 kb on - strand, within Dsui_0379at 377.675 kb on + strandat 377.713 kb on + strandat 377.783 kb on - strand, within Dsui_0379at 377.874 kb on + strand, within Dsui_0379at 377.884 kb on + strandat 377.892 kb on - strand, within Dsui_0379at 377.942 kb on - strand, within Dsui_0379at 378.012 kb on + strandat 378.014 kb on - strand, within Dsui_0379at 378.061 kb on + strand, within Dsui_0379at 378.069 kb on - strand, within Dsui_0379at 378.085 kb on - strand, within Dsui_0379at 378.169 kb on + strand, within Dsui_0379at 378.177 kb on - strand, within Dsui_0379at 378.192 kb on - strand, within Dsui_0379at 378.322 kb on - strand, within Dsui_0379at 378.324 kb on + strand, within Dsui_0379at 378.343 kb on - strand, within Dsui_0379at 378.343 kb on - strandat 378.343 kb on - strand, within Dsui_0379at 378.399 kb on - strand, within Dsui_0379at 378.492 kb on + strand, within Dsui_0379at 378.665 kb on + strand, within Dsui_0379at 378.691 kb on + strand, within Dsui_0379at 378.742 kb on - strand, within Dsui_0379at 378.748 kb on - strand, within Dsui_0379at 378.949 kb on - strand, within Dsui_0379at 379.000 kb on + strand, within Dsui_0379at 379.068 kb on + strand, within Dsui_0379at 379.126 kb on - strandat 379.180 kb on + strand, within Dsui_0379at 379.191 kb on + strand, within Dsui_0379at 379.191 kb on + strand, within Dsui_0379at 379.233 kb on - strandat 379.243 kb on - strandat 379.292 kb on + strandat 379.292 kb on + strandat 379.361 kb on + strandat 379.543 kb on + strandat 379.543 kb on + strandat 379.543 kb on + strandat 379.543 kb on + strandat 379.543 kb on + strandat 379.543 kb on + strandat 379.543 kb on + strandat 379.543 kb on + strandat 379.543 kb on + strandat 379.565 kb on - strandat 379.690 kb on + strandat 379.704 kb on + strandat 379.773 kb on + strandat 379.884 kb on - strandat 379.893 kb on + strandat 379.942 kb on - strand, within Dsui_0380at 379.993 kb on - strandat 380.003 kb on + strand, within Dsui_0380at 380.021 kb on + strand, within Dsui_0380at 380.021 kb on + strand, within Dsui_0380at 380.021 kb on + strand, within Dsui_0380at 380.021 kb on + strand, within Dsui_0380at 380.021 kb on + strand, within Dsui_0380at 380.029 kb on - strandat 380.029 kb on - strand, within Dsui_0380at 380.029 kb on - strandat 380.029 kb on - strand, within Dsui_0380at 380.245 kb on - strand, within Dsui_0380at 380.389 kb on + strand, within Dsui_0380at 380.397 kb on - strand, within Dsui_0380at 380.414 kb on + strand, within Dsui_0380at 380.494 kb on - strand, within Dsui_0380

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrite 0.3 mM
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375,070 - Dsui_0378 0.52 +0.4
375,070 - Dsui_0378 0.52 +0.4
375,078 - Dsui_0378 0.53 +0.4
375,080 + Dsui_0378 0.53 +0.2
375,156 - Dsui_0378 0.58 -0.6
375,197 + Dsui_0378 0.61 +1.0
375,266 + Dsui_0378 0.66 -0.1
375,341 + Dsui_0378 0.71 -0.8
375,355 - Dsui_0378 0.72 -1.2
375,388 + Dsui_0378 0.75 -1.1
375,466 - Dsui_0378 0.80 +0.4
375,604 + -0.7
375,631 - -0.6
375,668 - -1.6
375,673 + -0.4
375,674 + +0.7
375,681 - +0.4
375,684 + -0.3
375,692 - +0.4
375,694 + -0.3
375,694 + -0.4
375,748 + -0.1
375,841 + +0.4
375,894 + -0.2
375,997 - -1.2
376,030 + -0.8
376,057 + -2.2
376,062 - +0.4
376,067 + -0.6
376,103 - +0.4
376,150 + -1.2
376,150 + -0.6
376,150 - +0.4
376,204 + -1.2
376,207 - +0.4
376,208 - -0.6
376,212 - -0.6
376,214 - -1.9
376,231 - +1.4
376,268 - +0.4
376,336 + -0.6
376,387 + Dsui_0379 0.11 +0.4
376,537 + +0.4
376,550 + Dsui_0379 0.16 +0.4
376,550 + Dsui_0379 0.16 -0.6
376,608 + Dsui_0379 0.17 -0.6
376,616 - Dsui_0379 0.17 +0.4
376,640 + Dsui_0379 0.18 +0.4
376,666 - Dsui_0379 0.19 -1.2
376,684 - Dsui_0379 0.19 +0.4
376,684 - Dsui_0379 0.19 +0.4
376,754 + Dsui_0379 0.21 +0.4
376,783 + Dsui_0379 0.22 -1.6
376,887 - +0.4
377,003 - Dsui_0379 0.28 -1.9
377,040 + Dsui_0379 0.29 +0.4
377,068 + Dsui_0379 0.30 +0.4
377,107 + +0.4
377,162 + Dsui_0379 0.33 +0.4
377,163 - +0.4
377,215 - +0.4
377,299 + Dsui_0379 0.37 -1.9
377,354 + Dsui_0379 0.38 -0.6
377,375 + Dsui_0379 0.39 +0.4
377,403 - Dsui_0379 0.40 -1.2
377,474 - Dsui_0379 0.42 -1.6
377,511 + Dsui_0379 0.43 +0.4
377,539 + Dsui_0379 0.43 -3.3
377,551 + Dsui_0379 0.44 +0.4
377,574 + Dsui_0379 0.44 +0.4
377,622 - Dsui_0379 0.46 -1.2
377,675 + +0.4
377,713 + +0.4
377,783 - Dsui_0379 0.50 -2.2
377,874 + Dsui_0379 0.53 -2.2
377,884 + +0.4
377,892 - Dsui_0379 0.53 +0.4
377,942 - Dsui_0379 0.55 -0.6
378,012 + +0.4
378,014 - Dsui_0379 0.57 -1.6
378,061 + Dsui_0379 0.58 -0.6
378,069 - Dsui_0379 0.58 -1.2
378,085 - Dsui_0379 0.59 -1.2
378,169 + Dsui_0379 0.61 +0.4
378,177 - Dsui_0379 0.61 -0.6
378,192 - Dsui_0379 0.62 -1.2
378,322 - Dsui_0379 0.65 -0.6
378,324 + Dsui_0379 0.65 +0.4
378,343 - Dsui_0379 0.66 -2.2
378,343 - +0.4
378,343 - Dsui_0379 0.66 -1.6
378,399 - Dsui_0379 0.68 +0.4
378,492 + Dsui_0379 0.70 -0.6
378,665 + Dsui_0379 0.75 -1.2
378,691 + Dsui_0379 0.76 -0.6
378,742 - Dsui_0379 0.77 -0.6
378,748 - Dsui_0379 0.77 -1.6
378,949 - Dsui_0379 0.83 +0.4
379,000 + Dsui_0379 0.85 -0.6
379,068 + Dsui_0379 0.86 +0.4
379,126 - +0.4
379,180 + Dsui_0379 0.90 +0.4
379,191 + Dsui_0379 0.90 +1.8
379,191 + Dsui_0379 0.90 -1.2
379,233 - -0.6
379,243 - -1.9
379,292 + -0.6
379,292 + -2.6
379,361 + +0.4
379,543 + +0.4
379,543 + +0.4
379,543 + -0.6
379,543 + -0.6
379,543 + -2.6
379,543 + +0.4
379,543 + +0.4
379,543 + -1.6
379,543 + -1.6
379,565 - -0.6
379,690 + +0.4
379,704 + +0.4
379,773 + -1.6
379,884 - +0.4
379,893 + -0.6
379,942 - Dsui_0380 0.15 -1.9
379,993 - +0.4
380,003 + Dsui_0380 0.23 -1.2
380,021 + Dsui_0380 0.25 +0.8
380,021 + Dsui_0380 0.25 -0.5
380,021 + Dsui_0380 0.25 -1.4
380,021 + Dsui_0380 0.25 -0.6
380,021 + Dsui_0380 0.25 -0.4
380,029 - +0.4
380,029 - Dsui_0380 0.26 -2.4
380,029 - +0.4
380,029 - Dsui_0380 0.26 -1.2
380,245 - Dsui_0380 0.52 -1.6
380,389 + Dsui_0380 0.70 +0.8
380,397 - Dsui_0380 0.71 -1.2
380,414 + Dsui_0380 0.73 +0.4
380,494 - Dsui_0380 0.83 -1.6

Or see this region's nucleotide sequence