Experiment: ALP with nitrite 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0305 and Dsui_0306 are separated by 136 nucleotides Dsui_0306 and Dsui_0307 are separated by 31 nucleotides Dsui_0307 and Dsui_0308 are separated by 132 nucleotides
Dsui_0305: Dsui_0305 - transcriptional regulator, at 306,236 to 307,129
_0305
Dsui_0306: Dsui_0306 - putative permease, at 307,266 to 308,054
_0306
Dsui_0307: Dsui_0307 - methyl-accepting chemotaxis protein, at 308,086 to 309,693
_0307
Dsui_0308: Dsui_0308 - Major Facilitator Superfamily transporter, at 309,826 to 311,151
_0308
Position (kb) 308
309
310 Strain fitness (log2 ratio) -2
-1
0
1 at 307.109 kb on + strand at 307.369 kb on - strand, within Dsui_0306 at 307.597 kb on - strand, within Dsui_0306 at 307.665 kb on + strand, within Dsui_0306 at 307.714 kb on - strand at 307.803 kb on - strand, within Dsui_0306 at 307.848 kb on - strand, within Dsui_0306 at 307.936 kb on + strand, within Dsui_0306 at 308.070 kb on + strand at 308.120 kb on - strand at 308.315 kb on - strand at 308.402 kb on - strand, within Dsui_0307 at 308.434 kb on - strand, within Dsui_0307 at 308.632 kb on + strand at 308.640 kb on - strand, within Dsui_0307 at 308.667 kb on + strand, within Dsui_0307 at 308.679 kb on + strand, within Dsui_0307 at 308.684 kb on + strand, within Dsui_0307 at 308.694 kb on + strand, within Dsui_0307 at 308.697 kb on - strand, within Dsui_0307 at 308.735 kb on + strand, within Dsui_0307 at 308.769 kb on + strand, within Dsui_0307 at 308.769 kb on + strand, within Dsui_0307 at 308.769 kb on + strand, within Dsui_0307 at 308.777 kb on - strand, within Dsui_0307 at 308.832 kb on + strand, within Dsui_0307 at 308.832 kb on + strand, within Dsui_0307 at 308.832 kb on + strand, within Dsui_0307 at 308.832 kb on + strand, within Dsui_0307 at 308.887 kb on + strand, within Dsui_0307 at 309.116 kb on + strand, within Dsui_0307 at 309.116 kb on + strand at 309.126 kb on + strand, within Dsui_0307 at 309.129 kb on - strand, within Dsui_0307 at 309.129 kb on - strand, within Dsui_0307 at 309.134 kb on - strand, within Dsui_0307 at 309.217 kb on - strand, within Dsui_0307 at 309.323 kb on - strand, within Dsui_0307 at 309.504 kb on + strand at 309.573 kb on - strand at 309.603 kb on + strand at 309.659 kb on + strand at 309.667 kb on - strand at 309.667 kb on - strand at 309.667 kb on - strand at 309.769 kb on + strand at 309.928 kb on - strand at 309.928 kb on - strand at 310.155 kb on + strand at 310.286 kb on - strand, within Dsui_0308 at 310.292 kb on + strand, within Dsui_0308 at 310.389 kb on + strand at 310.427 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrite 0.3 mM remove 307,109 + +0.4 307,369 - Dsui_0306 0.13 +0.4 307,597 - Dsui_0306 0.42 +0.4 307,665 + Dsui_0306 0.51 -0.6 307,714 - -1.1 307,803 - Dsui_0306 0.68 -0.9 307,848 - Dsui_0306 0.74 -0.6 307,936 + Dsui_0306 0.85 -1.1 308,070 + +0.4 308,120 - -0.6 308,315 - -0.1 308,402 - Dsui_0307 0.20 -0.9 308,434 - Dsui_0307 0.22 -1.1 308,632 + +0.4 308,640 - Dsui_0307 0.34 +0.4 308,667 + Dsui_0307 0.36 -1.1 308,679 + Dsui_0307 0.37 -1.9 308,684 + Dsui_0307 0.37 +0.4 308,694 + Dsui_0307 0.38 -1.1 308,697 - Dsui_0307 0.38 -0.6 308,735 + Dsui_0307 0.40 +0.4 308,769 + Dsui_0307 0.42 -1.9 308,769 + Dsui_0307 0.42 -1.1 308,769 + Dsui_0307 0.42 -1.1 308,777 - Dsui_0307 0.43 -1.6 308,832 + Dsui_0307 0.46 -0.6 308,832 + Dsui_0307 0.46 -1.1 308,832 + Dsui_0307 0.46 -1.1 308,832 + Dsui_0307 0.46 +0.4 308,887 + Dsui_0307 0.50 -2.1 309,116 + Dsui_0307 0.64 +0.4 309,116 + +0.4 309,126 + Dsui_0307 0.65 -1.6 309,129 - Dsui_0307 0.65 -0.1 309,129 - Dsui_0307 0.65 -0.1 309,134 - Dsui_0307 0.65 +0.3 309,217 - Dsui_0307 0.70 -0.3 309,323 - Dsui_0307 0.77 -0.1 309,504 + +0.4 309,573 - -0.8 309,603 + +0.4 309,659 + +0.4 309,667 - -1.3 309,667 - -0.5 309,667 - +0.1 309,769 + -1.1 309,928 - -0.6 309,928 - +0.4 310,155 + -1.6 310,286 - Dsui_0308 0.35 -1.1 310,292 + Dsui_0308 0.35 -1.6 310,389 + +0.4 310,427 + +0.4
Or see this region's nucleotide sequence