Experiment: ALP with nitrite 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0283 and Dsui_0284 are separated by 42 nucleotides Dsui_0284 and Dsui_0285 are separated by 295 nucleotides
Dsui_0283: Dsui_0283 - chaperonin GroL, at 283,284 to 284,933
_0283
Dsui_0284: Dsui_0284 - Co-chaperonin GroES, at 284,976 to 285,266
_0284
Dsui_0285: Dsui_0285 - methionine aminopeptidase, type I, at 285,562 to 286,386
_0285
Position (kb) 284
285
286 Strain fitness (log2 ratio) -2
-1
0
1 at 284.974 kb on - strand at 284.981 kb on - strand at 284.981 kb on - strand at 285.000 kb on - strand at 285.306 kb on - strand at 285.343 kb on - strand at 285.442 kb on - strand at 285.442 kb on - strand at 285.537 kb on - strand at 285.560 kb on + strand at 285.563 kb on - strand at 285.568 kb on - strand at 285.568 kb on - strand at 285.574 kb on - strand at 285.585 kb on - strand at 285.610 kb on + strand at 285.658 kb on + strand, within Dsui_0285 at 285.666 kb on - strand, within Dsui_0285 at 285.697 kb on + strand, within Dsui_0285 at 285.703 kb on + strand at 285.711 kb on - strand, within Dsui_0285 at 285.773 kb on - strand, within Dsui_0285 at 285.797 kb on - strand, within Dsui_0285 at 285.824 kb on - strand, within Dsui_0285 at 285.852 kb on - strand, within Dsui_0285 at 285.852 kb on - strand, within Dsui_0285 at 285.887 kb on + strand at 285.895 kb on - strand, within Dsui_0285 at 285.913 kb on + strand at 285.983 kb on + strand, within Dsui_0285 at 286.042 kb on + strand at 286.154 kb on - strand, within Dsui_0285 at 286.172 kb on + strand at 286.178 kb on + strand, within Dsui_0285 at 286.179 kb on - strand, within Dsui_0285 at 286.180 kb on - strand, within Dsui_0285 at 286.180 kb on - strand, within Dsui_0285 at 286.180 kb on - strand, within Dsui_0285 at 286.180 kb on - strand, within Dsui_0285 at 286.180 kb on - strand, within Dsui_0285 at 286.186 kb on - strand, within Dsui_0285 at 286.190 kb on - strand, within Dsui_0285
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrite 0.3 mM remove 284,974 - -0.0 284,981 - -0.1 284,981 - +0.0 285,000 - +0.2 285,306 - -0.0 285,343 - -0.2 285,442 - -2.4 285,442 - +0.5 285,537 - -1.1 285,560 + +0.5 285,563 - -1.1 285,568 - -0.5 285,568 - -0.5 285,574 - -0.5 285,585 - -1.5 285,610 + +0.5 285,658 + Dsui_0285 0.12 -0.5 285,666 - Dsui_0285 0.13 -1.1 285,697 + Dsui_0285 0.16 -1.1 285,703 + +0.5 285,711 - Dsui_0285 0.18 -1.3 285,773 - Dsui_0285 0.26 +0.5 285,797 - Dsui_0285 0.28 -0.5 285,824 - Dsui_0285 0.32 -0.5 285,852 - Dsui_0285 0.35 +0.5 285,852 - Dsui_0285 0.35 -2.5 285,887 + +0.5 285,895 - Dsui_0285 0.40 -0.5 285,913 + +0.5 285,983 + Dsui_0285 0.51 -2.1 286,042 + +0.5 286,154 - Dsui_0285 0.72 +0.2 286,172 + +0.5 286,178 + Dsui_0285 0.75 -2.1 286,179 - Dsui_0285 0.75 +0.5 286,180 - Dsui_0285 0.75 +0.5 286,180 - Dsui_0285 0.75 +0.5 286,180 - Dsui_0285 0.75 -0.5 286,180 - Dsui_0285 0.75 +0.5 286,180 - Dsui_0285 0.75 -1.7 286,186 - Dsui_0285 0.76 -2.1 286,190 - Dsui_0285 0.76 -1.9
Or see this region's nucleotide sequence