Experiment: ALP with nitrite 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0279 and Dsui_0280 overlap by 4 nucleotides Dsui_0280 and Dsui_0281 overlap by 1 nucleotides Dsui_0281 and Dsui_0282 are separated by 416 nucleotides
Dsui_0279: Dsui_0279 - K+-transporting ATPase, KdpA, at 280,188 to 281,996
_0279
Dsui_0280: Dsui_0280 - F subunit of K+-transporting ATPase (Potass_KdpF), at 281,993 to 282,085
_0280
Dsui_0281: Dsui_0281 - hypothetical protein, at 282,085 to 282,174
_0281
Dsui_0282: Dsui_0282 - hypothetical protein, at 282,591 to 283,034
_0282
Position (kb) 281
282
283 Strain fitness (log2 ratio) -2
-1
0
1
2 at 281.353 kb on - strand, within Dsui_0279 at 281.364 kb on + strand at 281.432 kb on + strand, within Dsui_0279 at 281.448 kb on - strand, within Dsui_0279 at 281.467 kb on + strand at 281.482 kb on - strand, within Dsui_0279 at 281.589 kb on + strand, within Dsui_0279 at 281.610 kb on + strand, within Dsui_0279 at 281.618 kb on - strand, within Dsui_0279 at 281.628 kb on + strand at 281.684 kb on + strand, within Dsui_0279 at 281.692 kb on - strand, within Dsui_0279 at 281.694 kb on + strand, within Dsui_0279 at 281.706 kb on + strand, within Dsui_0279 at 281.750 kb on - strand at 281.813 kb on - strand at 281.887 kb on + strand at 281.899 kb on + strand at 281.945 kb on - strand at 282.017 kb on - strand, within Dsui_0280 at 282.017 kb on - strand, within Dsui_0280 at 282.017 kb on - strand, within Dsui_0280 at 282.056 kb on + strand, within Dsui_0280 at 282.071 kb on + strand, within Dsui_0280 at 282.166 kb on - strand at 282.201 kb on - strand at 282.257 kb on - strand at 282.426 kb on - strand at 282.589 kb on + strand at 282.589 kb on + strand at 282.669 kb on - strand, within Dsui_0282 at 282.737 kb on - strand, within Dsui_0282 at 282.878 kb on - strand, within Dsui_0282 at 282.887 kb on + strand, within Dsui_0282 at 282.902 kb on + strand, within Dsui_0282 at 282.910 kb on - strand, within Dsui_0282 at 282.910 kb on - strand, within Dsui_0282 at 282.953 kb on + strand, within Dsui_0282 at 282.961 kb on - strand, within Dsui_0282 at 282.998 kb on + strand at 283.026 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrite 0.3 mM remove 281,353 - Dsui_0279 0.64 -1.1 281,364 + +0.5 281,432 + Dsui_0279 0.69 +0.5 281,448 - Dsui_0279 0.70 -0.5 281,467 + +0.5 281,482 - Dsui_0279 0.72 +0.5 281,589 + Dsui_0279 0.77 -2.7 281,610 + Dsui_0279 0.79 -1.1 281,618 - Dsui_0279 0.79 -1.5 281,628 + +0.5 281,684 + Dsui_0279 0.83 +0.5 281,692 - Dsui_0279 0.83 -1.5 281,694 + Dsui_0279 0.83 -0.5 281,706 + Dsui_0279 0.84 -2.7 281,750 - +0.5 281,813 - +0.5 281,887 + +0.5 281,899 + +0.5 281,945 - -0.5 282,017 - Dsui_0280 0.26 -0.5 282,017 - Dsui_0280 0.26 -1.5 282,017 - Dsui_0280 0.26 +0.5 282,056 + Dsui_0280 0.68 -0.5 282,071 + Dsui_0280 0.84 -1.1 282,166 - +0.5 282,201 - -2.4 282,257 - +0.5 282,426 - +0.5 282,589 + -0.1 282,589 + +0.2 282,669 - Dsui_0282 0.18 -0.4 282,737 - Dsui_0282 0.33 -0.5 282,878 - Dsui_0282 0.65 -0.5 282,887 + Dsui_0282 0.67 +2.0 282,902 + Dsui_0282 0.70 -1.1 282,910 - Dsui_0282 0.72 +0.2 282,910 - Dsui_0282 0.72 -0.2 282,953 + Dsui_0282 0.82 -1.5 282,961 - Dsui_0282 0.83 -2.1 282,998 + -1.7 283,026 + -1.9
Or see this region's nucleotide sequence