Experiment: ALP with nitrite 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0209 and Dsui_0210 overlap by 1 nucleotides Dsui_0210 and Dsui_0211 are separated by 9 nucleotides Dsui_0211 and Dsui_0212 are separated by 57 nucleotides Dsui_0212 and Dsui_0213 overlap by 8 nucleotides Dsui_0213 and Dsui_0214 overlap by 14 nucleotides
Dsui_0209: Dsui_0209 - hypothetical protein, at 210,539 to 211,630
_0209
Dsui_0210: Dsui_0210 - hypothetical protein, at 211,630 to 213,639
_0210
Dsui_0211: Dsui_0211 - hypothetical protein, at 213,649 to 213,831
_0211
Dsui_0212: Dsui_0212 - hypothetical protein, at 213,889 to 214,266
_0212
Dsui_0213: Dsui_0213 - hypothetical protein, at 214,259 to 214,603
_0213
Dsui_0214: Dsui_0214 - TIGR02594 family protein, at 214,590 to 215,081
_0214
Position (kb) 211
212
213
214 Strain fitness (log2 ratio) -2
-1
0
1 at 210.704 kb on + strand, within Dsui_0209 at 210.832 kb on + strand, within Dsui_0209 at 210.971 kb on + strand at 211.087 kb on + strand, within Dsui_0209 at 211.258 kb on - strand, within Dsui_0209 at 211.304 kb on + strand, within Dsui_0209 at 211.462 kb on - strand, within Dsui_0209 at 211.671 kb on - strand at 211.700 kb on - strand at 211.899 kb on + strand, within Dsui_0210 at 211.907 kb on - strand, within Dsui_0210 at 211.965 kb on + strand at 211.965 kb on + strand at 211.965 kb on + strand at 211.973 kb on - strand, within Dsui_0210 at 211.973 kb on - strand, within Dsui_0210 at 211.973 kb on - strand at 211.973 kb on - strand, within Dsui_0210 at 211.988 kb on - strand at 212.154 kb on - strand at 212.205 kb on + strand, within Dsui_0210 at 212.223 kb on - strand at 212.223 kb on - strand at 212.223 kb on - strand, within Dsui_0210 at 212.328 kb on + strand, within Dsui_0210 at 212.349 kb on + strand, within Dsui_0210 at 212.398 kb on - strand at 212.509 kb on - strand, within Dsui_0210 at 212.621 kb on + strand, within Dsui_0210 at 212.656 kb on - strand, within Dsui_0210 at 212.921 kb on + strand, within Dsui_0210 at 212.921 kb on + strand at 212.929 kb on - strand, within Dsui_0210 at 212.929 kb on - strand, within Dsui_0210 at 212.963 kb on + strand at 212.971 kb on - strand at 212.988 kb on + strand, within Dsui_0210 at 213.197 kb on + strand, within Dsui_0210 at 213.256 kb on - strand, within Dsui_0210 at 213.326 kb on + strand, within Dsui_0210 at 213.350 kb on - strand, within Dsui_0210 at 213.562 kb on + strand at 213.671 kb on + strand, within Dsui_0211 at 213.679 kb on - strand at 213.843 kb on - strand at 213.952 kb on - strand at 213.952 kb on - strand, within Dsui_0212 at 214.242 kb on + strand at 214.242 kb on + strand at 214.284 kb on + strand at 214.301 kb on + strand, within Dsui_0213 at 214.312 kb on - strand at 214.316 kb on + strand, within Dsui_0213 at 214.324 kb on - strand, within Dsui_0213 at 214.324 kb on - strand, within Dsui_0213 at 214.324 kb on - strand at 214.349 kb on - strand at 214.429 kb on - strand at 214.621 kb on + strand at 214.627 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrite 0.3 mM remove 210,704 + Dsui_0209 0.15 -1.1 210,832 + Dsui_0209 0.27 -0.5 210,971 + -1.1 211,087 + Dsui_0209 0.50 -0.5 211,258 - Dsui_0209 0.66 -1.5 211,304 + Dsui_0209 0.70 -2.3 211,462 - Dsui_0209 0.85 -1.8 211,671 - -0.5 211,700 - +0.5 211,899 + Dsui_0210 0.13 -0.5 211,907 - Dsui_0210 0.14 -1.1 211,965 + +0.5 211,965 + +0.5 211,965 + -1.1 211,973 - Dsui_0210 0.17 -1.8 211,973 - Dsui_0210 0.17 -2.7 211,973 - +0.5 211,973 - Dsui_0210 0.17 +0.5 211,988 - +0.5 212,154 - +0.5 212,205 + Dsui_0210 0.29 -0.5 212,223 - +0.5 212,223 - +0.5 212,223 - Dsui_0210 0.30 +0.5 212,328 + Dsui_0210 0.35 -1.1 212,349 + Dsui_0210 0.36 -1.5 212,398 - +0.5 212,509 - Dsui_0210 0.44 +0.5 212,621 + Dsui_0210 0.49 -2.1 212,656 - Dsui_0210 0.51 -2.1 212,921 + Dsui_0210 0.64 -1.1 212,921 + +0.5 212,929 - Dsui_0210 0.65 -0.5 212,929 - Dsui_0210 0.65 -1.8 212,963 + -0.5 212,971 - +0.5 212,988 + Dsui_0210 0.68 -1.1 213,197 + Dsui_0210 0.78 -1.1 213,256 - Dsui_0210 0.81 +0.5 213,326 + Dsui_0210 0.84 -1.5 213,350 - Dsui_0210 0.86 -0.5 213,562 + -2.3 213,671 + Dsui_0211 0.12 -1.1 213,679 - +0.5 213,843 - -1.1 213,952 - +0.5 213,952 - Dsui_0212 0.17 -1.5 214,242 + +0.5 214,242 + -0.5 214,284 + -0.5 214,301 + Dsui_0213 0.12 -0.5 214,312 - +0.5 214,316 + Dsui_0213 0.17 -0.5 214,324 - Dsui_0213 0.19 -1.1 214,324 - Dsui_0213 0.19 +0.5 214,324 - +0.5 214,349 - +0.5 214,429 - +0.5 214,621 + -1.9 214,627 + -0.5
Or see this region's nucleotide sequence