Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_26710 and AO353_26715 are separated by 25 nucleotides AO353_26715 and AO353_26720 are separated by 14 nucleotides AO353_26720 and AO353_26725 are separated by 195 nucleotides
AO353_26710: AO353_26710 - citrate-proton symporter, at 5,846,082 to 5,847,386
_26710
AO353_26715: AO353_26715 - molybdenum ABC transporter substrate-binding protein, at 5,847,412 to 5,848,188
_26715
AO353_26720: AO353_26720 - LysR family transcriptional regulator, at 5,848,203 to 5,849,120
_26720
AO353_26725: AO353_26725 - potassium transporter KefB, at 5,849,316 to 5,851,124
_26725
Position (kb) 5848
5849
5850 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5847.205 kb on - strand, within AO353_26710 at 5847.224 kb on - strand, within AO353_26710 at 5847.224 kb on - strand, within AO353_26710 at 5847.268 kb on - strand at 5847.268 kb on - strand at 5847.339 kb on + strand at 5847.339 kb on + strand at 5847.339 kb on + strand at 5847.340 kb on - strand at 5847.340 kb on - strand at 5847.340 kb on - strand at 5847.346 kb on - strand at 5847.367 kb on + strand at 5847.367 kb on + strand at 5847.368 kb on - strand at 5847.384 kb on + strand at 5847.385 kb on - strand at 5847.385 kb on - strand at 5847.407 kb on + strand at 5847.422 kb on + strand at 5847.526 kb on + strand, within AO353_26715 at 5847.526 kb on + strand, within AO353_26715 at 5847.527 kb on - strand, within AO353_26715 at 5847.527 kb on - strand, within AO353_26715 at 5847.528 kb on + strand, within AO353_26715 at 5847.528 kb on + strand, within AO353_26715 at 5847.529 kb on - strand, within AO353_26715 at 5847.529 kb on - strand, within AO353_26715 at 5847.536 kb on + strand, within AO353_26715 at 5847.537 kb on - strand, within AO353_26715 at 5847.835 kb on + strand, within AO353_26715 at 5847.836 kb on - strand, within AO353_26715 at 5847.859 kb on + strand, within AO353_26715 at 5847.859 kb on + strand, within AO353_26715 at 5847.859 kb on + strand, within AO353_26715 at 5847.859 kb on + strand, within AO353_26715 at 5847.859 kb on + strand, within AO353_26715 at 5847.860 kb on - strand, within AO353_26715 at 5847.860 kb on - strand, within AO353_26715 at 5847.968 kb on - strand, within AO353_26715 at 5848.124 kb on - strand at 5848.244 kb on + strand at 5848.341 kb on + strand, within AO353_26720 at 5848.430 kb on + strand, within AO353_26720 at 5848.430 kb on + strand, within AO353_26720 at 5848.431 kb on - strand, within AO353_26720 at 5848.431 kb on - strand, within AO353_26720 at 5848.537 kb on + strand, within AO353_26720 at 5848.537 kb on + strand, within AO353_26720 at 5848.537 kb on + strand, within AO353_26720 at 5848.537 kb on + strand, within AO353_26720 at 5848.537 kb on + strand, within AO353_26720 at 5848.537 kb on + strand, within AO353_26720 at 5848.537 kb on + strand, within AO353_26720 at 5848.537 kb on + strand, within AO353_26720 at 5848.537 kb on + strand, within AO353_26720 at 5848.538 kb on - strand, within AO353_26720 at 5848.538 kb on - strand, within AO353_26720 at 5848.538 kb on - strand, within AO353_26720 at 5848.538 kb on - strand, within AO353_26720 at 5848.538 kb on - strand, within AO353_26720 at 5848.538 kb on - strand, within AO353_26720 at 5848.538 kb on - strand, within AO353_26720 at 5848.538 kb on - strand, within AO353_26720 at 5848.538 kb on - strand, within AO353_26720 at 5848.538 kb on - strand, within AO353_26720 at 5848.538 kb on - strand, within AO353_26720 at 5848.538 kb on - strand, within AO353_26720 at 5848.538 kb on - strand, within AO353_26720 at 5848.549 kb on + strand, within AO353_26720 at 5848.550 kb on - strand, within AO353_26720 at 5848.615 kb on + strand at 5848.615 kb on + strand, within AO353_26720 at 5848.615 kb on + strand, within AO353_26720 at 5848.615 kb on + strand, within AO353_26720 at 5848.615 kb on + strand, within AO353_26720 at 5848.615 kb on + strand, within AO353_26720 at 5848.616 kb on - strand, within AO353_26720 at 5848.616 kb on - strand, within AO353_26720 at 5848.616 kb on - strand, within AO353_26720 at 5848.616 kb on - strand, within AO353_26720 at 5848.771 kb on + strand, within AO353_26720 at 5848.771 kb on + strand, within AO353_26720 at 5848.772 kb on - strand, within AO353_26720 at 5848.798 kb on + strand, within AO353_26720 at 5848.798 kb on + strand, within AO353_26720 at 5848.798 kb on + strand, within AO353_26720 at 5848.798 kb on + strand, within AO353_26720 at 5848.798 kb on + strand, within AO353_26720 at 5848.798 kb on + strand, within AO353_26720 at 5848.798 kb on + strand, within AO353_26720 at 5848.798 kb on + strand, within AO353_26720 at 5848.798 kb on + strand, within AO353_26720 at 5848.799 kb on - strand, within AO353_26720 at 5848.799 kb on - strand, within AO353_26720 at 5848.799 kb on - strand, within AO353_26720 at 5848.799 kb on - strand, within AO353_26720 at 5848.799 kb on - strand, within AO353_26720 at 5848.799 kb on - strand, within AO353_26720 at 5848.799 kb on - strand, within AO353_26720 at 5848.799 kb on - strand, within AO353_26720 at 5848.802 kb on - strand, within AO353_26720 at 5848.834 kb on + strand, within AO353_26720 at 5848.835 kb on - strand, within AO353_26720 at 5849.155 kb on + strand at 5849.155 kb on + strand at 5849.156 kb on - strand at 5849.189 kb on - strand at 5849.206 kb on + strand at 5849.206 kb on + strand at 5849.422 kb on - strand at 5849.422 kb on - strand at 5849.492 kb on + strand at 5849.492 kb on + strand at 5849.493 kb on - strand at 5849.640 kb on + strand at 5849.640 kb on + strand, within AO353_26725 at 5849.640 kb on + strand, within AO353_26725 at 5849.640 kb on + strand, within AO353_26725 at 5849.640 kb on + strand, within AO353_26725 at 5849.640 kb on + strand, within AO353_26725 at 5849.640 kb on + strand, within AO353_26725 at 5849.640 kb on + strand, within AO353_26725 at 5849.640 kb on + strand, within AO353_26725 at 5849.641 kb on - strand, within AO353_26725 at 5849.641 kb on - strand, within AO353_26725 at 5849.641 kb on - strand, within AO353_26725 at 5849.925 kb on + strand, within AO353_26725 at 5849.926 kb on - strand, within AO353_26725 at 5849.926 kb on - strand, within AO353_26725 at 5849.926 kb on - strand, within AO353_26725
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 5,847,205 - AO353_26710 0.86 +2.0 5,847,224 - AO353_26710 0.88 -0.4 5,847,224 - AO353_26710 0.88 +0.0 5,847,268 - -0.1 5,847,268 - -0.9 5,847,339 + -1.1 5,847,339 + -0.8 5,847,339 + -0.7 5,847,340 - +0.6 5,847,340 - +0.5 5,847,340 - -0.2 5,847,346 - +0.2 5,847,367 + -2.5 5,847,367 + +0.1 5,847,368 - -1.8 5,847,384 + -0.2 5,847,385 - -1.0 5,847,385 - +1.2 5,847,407 + -0.1 5,847,422 + -0.7 5,847,526 + AO353_26715 0.15 -0.5 5,847,526 + AO353_26715 0.15 +0.4 5,847,527 - AO353_26715 0.15 +0.6 5,847,527 - AO353_26715 0.15 +0.5 5,847,528 + AO353_26715 0.15 -0.1 5,847,528 + AO353_26715 0.15 -0.4 5,847,529 - AO353_26715 0.15 +1.5 5,847,529 - AO353_26715 0.15 -0.8 5,847,536 + AO353_26715 0.16 +0.4 5,847,537 - AO353_26715 0.16 -0.6 5,847,835 + AO353_26715 0.54 +0.6 5,847,836 - AO353_26715 0.55 -0.4 5,847,859 + AO353_26715 0.58 +0.2 5,847,859 + AO353_26715 0.58 -0.5 5,847,859 + AO353_26715 0.58 +1.6 5,847,859 + AO353_26715 0.58 +0.7 5,847,859 + AO353_26715 0.58 +1.1 5,847,860 - AO353_26715 0.58 -0.2 5,847,860 - AO353_26715 0.58 -0.5 5,847,968 - AO353_26715 0.72 -1.0 5,848,124 - +0.3 5,848,244 + -1.6 5,848,341 + AO353_26720 0.15 -0.1 5,848,430 + AO353_26720 0.25 -0.2 5,848,430 + AO353_26720 0.25 -0.7 5,848,431 - AO353_26720 0.25 +0.5 5,848,431 - AO353_26720 0.25 +0.4 5,848,537 + AO353_26720 0.36 -0.4 5,848,537 + AO353_26720 0.36 -0.1 5,848,537 + AO353_26720 0.36 -0.5 5,848,537 + AO353_26720 0.36 -0.4 5,848,537 + AO353_26720 0.36 +0.1 5,848,537 + AO353_26720 0.36 -0.2 5,848,537 + AO353_26720 0.36 -1.2 5,848,537 + AO353_26720 0.36 -0.9 5,848,537 + AO353_26720 0.36 -1.4 5,848,538 - AO353_26720 0.36 -0.8 5,848,538 - AO353_26720 0.36 -0.3 5,848,538 - AO353_26720 0.36 -0.2 5,848,538 - AO353_26720 0.36 +0.2 5,848,538 - AO353_26720 0.36 +0.3 5,848,538 - AO353_26720 0.36 +1.8 5,848,538 - AO353_26720 0.36 +0.0 5,848,538 - AO353_26720 0.36 -1.7 5,848,538 - AO353_26720 0.36 +1.0 5,848,538 - AO353_26720 0.36 -0.2 5,848,538 - AO353_26720 0.36 +0.5 5,848,538 - AO353_26720 0.36 +0.7 5,848,538 - AO353_26720 0.36 -1.3 5,848,549 + AO353_26720 0.38 +0.3 5,848,550 - AO353_26720 0.38 +0.6 5,848,615 + -0.5 5,848,615 + AO353_26720 0.45 +0.4 5,848,615 + AO353_26720 0.45 -0.2 5,848,615 + AO353_26720 0.45 -0.8 5,848,615 + AO353_26720 0.45 -1.1 5,848,615 + AO353_26720 0.45 +0.1 5,848,616 - AO353_26720 0.45 +1.4 5,848,616 - AO353_26720 0.45 +0.3 5,848,616 - AO353_26720 0.45 -0.6 5,848,616 - AO353_26720 0.45 -1.0 5,848,771 + AO353_26720 0.62 +0.7 5,848,771 + AO353_26720 0.62 -1.1 5,848,772 - AO353_26720 0.62 -1.1 5,848,798 + AO353_26720 0.65 -0.2 5,848,798 + AO353_26720 0.65 -1.1 5,848,798 + AO353_26720 0.65 -0.1 5,848,798 + AO353_26720 0.65 -1.3 5,848,798 + AO353_26720 0.65 +0.2 5,848,798 + AO353_26720 0.65 -0.8 5,848,798 + AO353_26720 0.65 -0.4 5,848,798 + AO353_26720 0.65 -0.6 5,848,798 + AO353_26720 0.65 +1.2 5,848,799 - AO353_26720 0.65 -0.8 5,848,799 - AO353_26720 0.65 +0.9 5,848,799 - AO353_26720 0.65 +0.2 5,848,799 - AO353_26720 0.65 -0.2 5,848,799 - AO353_26720 0.65 -1.1 5,848,799 - AO353_26720 0.65 -0.6 5,848,799 - AO353_26720 0.65 -0.8 5,848,799 - AO353_26720 0.65 -0.2 5,848,802 - AO353_26720 0.65 +0.5 5,848,834 + AO353_26720 0.69 +0.3 5,848,835 - AO353_26720 0.69 -0.3 5,849,155 + -0.0 5,849,155 + -2.0 5,849,156 - -0.5 5,849,189 - +0.7 5,849,206 + +0.7 5,849,206 + +0.6 5,849,422 - -0.1 5,849,422 - -0.5 5,849,492 + -0.1 5,849,492 + -1.7 5,849,493 - +0.0 5,849,640 + -1.5 5,849,640 + AO353_26725 0.18 -0.2 5,849,640 + AO353_26725 0.18 +0.3 5,849,640 + AO353_26725 0.18 -0.2 5,849,640 + AO353_26725 0.18 -0.8 5,849,640 + AO353_26725 0.18 +1.1 5,849,640 + AO353_26725 0.18 +0.1 5,849,640 + AO353_26725 0.18 +1.0 5,849,640 + AO353_26725 0.18 -0.2 5,849,641 - AO353_26725 0.18 -1.0 5,849,641 - AO353_26725 0.18 -0.2 5,849,641 - AO353_26725 0.18 -1.3 5,849,925 + AO353_26725 0.34 -1.3 5,849,926 - AO353_26725 0.34 +0.4 5,849,926 - AO353_26725 0.34 +0.2 5,849,926 - AO353_26725 0.34 +0.6
Or see this region's nucleotide sequence