Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_26045

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_26035 and AO353_26045 are separated by 627 nucleotidesAO353_26045 and AO353_26050 are separated by 180 nucleotidesAO353_26050 and AO353_26055 are separated by 159 nucleotides AO353_26035: AO353_26035 - TetR family transcriptional regulator, at 5,734,561 to 5,735,208 _26035 AO353_26045: AO353_26045 - hypothetical protein, at 5,735,836 to 5,736,165 _26045 AO353_26050: AO353_26050 - hypothetical protein, at 5,736,346 to 5,736,705 _26050 AO353_26055: AO353_26055 - hypothetical protein, at 5,736,865 to 5,737,071 _26055 Position (kb) 5735 5736 5737Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5734.845 kb on + strand, within AO353_26035at 5734.845 kb on + strand, within AO353_26035at 5734.845 kb on + strand, within AO353_26035at 5734.845 kb on + strand, within AO353_26035at 5734.845 kb on + strand, within AO353_26035at 5734.845 kb on + strand, within AO353_26035at 5734.846 kb on - strand, within AO353_26035at 5734.846 kb on - strand, within AO353_26035at 5734.846 kb on - strand, within AO353_26035at 5734.850 kb on + strand, within AO353_26035at 5734.850 kb on + strand, within AO353_26035at 5734.882 kb on + strand, within AO353_26035at 5734.882 kb on + strand, within AO353_26035at 5734.882 kb on + strand, within AO353_26035at 5734.883 kb on - strand, within AO353_26035at 5734.883 kb on - strand, within AO353_26035at 5734.916 kb on + strand, within AO353_26035at 5734.916 kb on + strand, within AO353_26035at 5734.916 kb on + strand, within AO353_26035at 5734.916 kb on + strand, within AO353_26035at 5734.995 kb on + strand, within AO353_26035at 5734.995 kb on + strand, within AO353_26035at 5734.995 kb on + strand, within AO353_26035at 5734.996 kb on - strand, within AO353_26035at 5734.996 kb on - strand, within AO353_26035at 5734.996 kb on - strand, within AO353_26035at 5734.996 kb on - strand, within AO353_26035at 5735.037 kb on + strand, within AO353_26035at 5735.037 kb on + strand, within AO353_26035at 5735.037 kb on + strand, within AO353_26035at 5735.037 kb on + strand, within AO353_26035at 5735.037 kb on + strand, within AO353_26035at 5735.037 kb on + strand, within AO353_26035at 5735.038 kb on - strand, within AO353_26035at 5735.258 kb on + strandat 5735.292 kb on + strandat 5735.292 kb on + strandat 5735.292 kb on + strandat 5735.293 kb on - strandat 5735.293 kb on - strandat 5735.293 kb on - strandat 5735.293 kb on - strandat 5735.293 kb on - strandat 5735.293 kb on - strandat 5735.367 kb on + strandat 5735.367 kb on + strandat 5735.368 kb on - strandat 5735.368 kb on - strandat 5735.429 kb on + strandat 5735.429 kb on + strandat 5735.430 kb on - strandat 5735.571 kb on + strandat 5735.571 kb on + strandat 5735.571 kb on + strandat 5735.572 kb on - strandat 5735.572 kb on - strandat 5735.572 kb on - strandat 5735.639 kb on - strandat 5735.642 kb on + strandat 5735.642 kb on + strandat 5735.643 kb on - strandat 5735.643 kb on - strandat 5735.643 kb on - strandat 5735.652 kb on - strandat 5735.684 kb on - strandat 5735.684 kb on - strandat 5735.684 kb on - strandat 5735.684 kb on - strandat 5735.684 kb on - strandat 5735.719 kb on - strandat 5735.733 kb on + strandat 5735.733 kb on + strandat 5735.734 kb on - strandat 5735.759 kb on + strandat 5735.759 kb on + strandat 5735.760 kb on - strandat 5735.760 kb on - strandat 5735.760 kb on - strandat 5735.760 kb on - strandat 5735.760 kb on - strandat 5735.823 kb on + strandat 5735.894 kb on + strand, within AO353_26045at 5735.918 kb on + strand, within AO353_26045at 5735.918 kb on + strandat 5736.059 kb on + strand, within AO353_26045at 5736.060 kb on - strand, within AO353_26045at 5736.060 kb on - strand, within AO353_26045at 5736.060 kb on - strand, within AO353_26045at 5736.139 kb on + strandat 5736.144 kb on - strandat 5736.237 kb on + strandat 5736.348 kb on - strandat 5736.348 kb on - strandat 5736.415 kb on - strand, within AO353_26050at 5736.441 kb on - strand, within AO353_26050at 5736.443 kb on - strand, within AO353_26050at 5736.514 kb on + strand, within AO353_26050at 5736.594 kb on + strand, within AO353_26050at 5736.622 kb on - strandat 5736.674 kb on - strandat 5736.771 kb on + strandat 5736.771 kb on + strandat 5736.771 kb on + strandat 5736.771 kb on + strandat 5736.772 kb on - strandat 5736.772 kb on - strandat 5736.772 kb on - strandat 5736.818 kb on + strandat 5736.819 kb on - strandat 5736.823 kb on + strandat 5736.866 kb on + strandat 5736.886 kb on + strand, within AO353_26055at 5736.907 kb on - strand, within AO353_26055at 5736.913 kb on + strand, within AO353_26055at 5736.925 kb on - strand, within AO353_26055at 5736.940 kb on + strand, within AO353_26055at 5737.082 kb on + strandat 5737.108 kb on - strandat 5737.127 kb on + strandat 5737.127 kb on + strandat 5737.127 kb on + strandat 5737.127 kb on + strandat 5737.128 kb on - strandat 5737.128 kb on - strandat 5737.128 kb on - strandat 5737.128 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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5,734,845 + AO353_26035 0.44 +0.1
5,734,845 + AO353_26035 0.44 +0.2
5,734,845 + AO353_26035 0.44 -0.5
5,734,845 + AO353_26035 0.44 -0.1
5,734,845 + AO353_26035 0.44 -0.9
5,734,845 + AO353_26035 0.44 -1.0
5,734,846 - AO353_26035 0.44 -1.0
5,734,846 - AO353_26035 0.44 -1.6
5,734,846 - AO353_26035 0.44 +0.6
5,734,850 + AO353_26035 0.45 +0.3
5,734,850 + AO353_26035 0.45 -0.4
5,734,882 + AO353_26035 0.50 -0.6
5,734,882 + AO353_26035 0.50 +0.4
5,734,882 + AO353_26035 0.50 -0.6
5,734,883 - AO353_26035 0.50 +0.1
5,734,883 - AO353_26035 0.50 -0.1
5,734,916 + AO353_26035 0.55 -1.7
5,734,916 + AO353_26035 0.55 +0.8
5,734,916 + AO353_26035 0.55 -0.1
5,734,916 + AO353_26035 0.55 +0.2
5,734,995 + AO353_26035 0.67 -0.6
5,734,995 + AO353_26035 0.67 +0.8
5,734,995 + AO353_26035 0.67 -1.4
5,734,996 - AO353_26035 0.67 +1.4
5,734,996 - AO353_26035 0.67 +0.3
5,734,996 - AO353_26035 0.67 +0.2
5,734,996 - AO353_26035 0.67 -0.1
5,735,037 + AO353_26035 0.73 -0.3
5,735,037 + AO353_26035 0.73 -0.0
5,735,037 + AO353_26035 0.73 +0.5
5,735,037 + AO353_26035 0.73 +2.3
5,735,037 + AO353_26035 0.73 -1.5
5,735,037 + AO353_26035 0.73 +1.3
5,735,038 - AO353_26035 0.74 +0.7
5,735,258 + -0.0
5,735,292 + +0.1
5,735,292 + +1.9
5,735,292 + +0.6
5,735,293 - +0.6
5,735,293 - +0.8
5,735,293 - -0.5
5,735,293 - +0.6
5,735,293 - -1.8
5,735,293 - +0.2
5,735,367 + -1.1
5,735,367 + +0.9
5,735,368 - -0.2
5,735,368 - +0.4
5,735,429 + +1.3
5,735,429 + +0.2
5,735,430 - +0.4
5,735,571 + -0.2
5,735,571 + +0.3
5,735,571 + +1.2
5,735,572 - -1.1
5,735,572 - +1.4
5,735,572 - -2.3
5,735,639 - +0.5
5,735,642 + +0.6
5,735,642 + +1.6
5,735,643 - -0.5
5,735,643 - +1.8
5,735,643 - -0.4
5,735,652 - +0.6
5,735,684 - -0.7
5,735,684 - +0.8
5,735,684 - +0.6
5,735,684 - +0.3
5,735,684 - +0.5
5,735,719 - +0.5
5,735,733 + +1.0
5,735,733 + -1.4
5,735,734 - -1.3
5,735,759 + -0.3
5,735,759 + +0.1
5,735,760 - +1.8
5,735,760 - +0.7
5,735,760 - -0.4
5,735,760 - +0.9
5,735,760 - +0.2
5,735,823 + +1.0
5,735,894 + AO353_26045 0.18 -1.5
5,735,918 + AO353_26045 0.25 +0.5
5,735,918 + -0.5
5,736,059 + AO353_26045 0.68 -1.1
5,736,060 - AO353_26045 0.68 -1.2
5,736,060 - AO353_26045 0.68 -0.1
5,736,060 - AO353_26045 0.68 +0.3
5,736,139 + -0.3
5,736,144 - -0.8
5,736,237 + +0.5
5,736,348 - +0.3
5,736,348 - -0.1
5,736,415 - AO353_26050 0.19 -1.0
5,736,441 - AO353_26050 0.26 +0.1
5,736,443 - AO353_26050 0.27 +1.0
5,736,514 + AO353_26050 0.47 -2.9
5,736,594 + AO353_26050 0.69 +0.2
5,736,622 - +2.3
5,736,674 - -0.4
5,736,771 + +0.5
5,736,771 + -0.8
5,736,771 + +0.5
5,736,771 + +2.7
5,736,772 - -0.2
5,736,772 - -1.6
5,736,772 - -0.8
5,736,818 + +0.0
5,736,819 - -1.5
5,736,823 + +0.5
5,736,866 + -0.6
5,736,886 + AO353_26055 0.10 -1.5
5,736,907 - AO353_26055 0.20 -0.9
5,736,913 + AO353_26055 0.23 +0.8
5,736,925 - AO353_26055 0.29 +1.5
5,736,940 + AO353_26055 0.36 +0.8
5,737,082 + -0.6
5,737,108 - +0.5
5,737,127 + +0.5
5,737,127 + -0.6
5,737,127 + -2.0
5,737,127 + -0.8
5,737,128 - +2.1
5,737,128 - -1.7
5,737,128 - -2.2
5,737,128 - -0.5

Or see this region's nucleotide sequence