Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_21970

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_21955 and AO353_21960 overlap by 4 nucleotidesAO353_21960 and AO353_21965 are separated by 16 nucleotidesAO353_21965 and AO353_21970 are separated by 24 nucleotidesAO353_21970 and AO353_21975 are separated by 199 nucleotides AO353_21955: AO353_21955 - protein nirF, at 4,810,874 to 4,812,052 _21955 AO353_21960: AO353_21960 - disulfide bond formation protein DsbD, at 4,812,049 to 4,812,375 _21960 AO353_21965: AO353_21965 - cytochrome C biogenesis protein CcsA, at 4,812,392 to 4,812,706 _21965 AO353_21970: AO353_21970 - nitrite reductase, at 4,812,731 to 4,814,422 _21970 AO353_21975: AO353_21975 - AAA family ATPase, at 4,814,622 to 4,815,425 _21975 AO353_21980: AO353_21980 - cytochrome C oxidase, at 4,815,409 to 4,815,996 _21980 Position (kb) 4812 4813 4814 4815Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4811.767 kb on + strand, within AO353_21955at 4811.829 kb on + strand, within AO353_21955at 4811.829 kb on + strand, within AO353_21955at 4811.829 kb on + strand, within AO353_21955at 4811.829 kb on + strand, within AO353_21955at 4811.829 kb on + strand, within AO353_21955at 4811.829 kb on + strand, within AO353_21955at 4811.829 kb on + strand, within AO353_21955at 4811.829 kb on + strand, within AO353_21955at 4811.829 kb on + strand, within AO353_21955at 4811.829 kb on + strand, within AO353_21955at 4811.830 kb on - strand, within AO353_21955at 4811.830 kb on - strand, within AO353_21955at 4811.830 kb on - strand, within AO353_21955at 4811.830 kb on - strand, within AO353_21955at 4811.830 kb on - strand, within AO353_21955at 4811.830 kb on - strand, within AO353_21955at 4811.830 kb on - strand, within AO353_21955at 4811.830 kb on - strand, within AO353_21955at 4811.830 kb on - strand, within AO353_21955at 4811.830 kb on - strand, within AO353_21955at 4811.830 kb on - strand, within AO353_21955at 4811.830 kb on - strand, within AO353_21955at 4811.830 kb on - strand, within AO353_21955at 4811.933 kb on + strand, within AO353_21955at 4811.934 kb on - strand, within AO353_21955at 4811.934 kb on - strand, within AO353_21955at 4811.934 kb on - strand, within AO353_21955at 4811.934 kb on - strand, within AO353_21955at 4811.960 kb on + strandat 4811.960 kb on + strandat 4811.961 kb on - strandat 4811.961 kb on - strandat 4812.393 kb on + strandat 4812.394 kb on - strandat 4812.505 kb on + strand, within AO353_21965at 4812.552 kb on - strand, within AO353_21965at 4812.735 kb on + strandat 4812.736 kb on - strandat 4812.736 kb on - strandat 4812.756 kb on + strandat 4812.756 kb on + strandat 4812.756 kb on + strandat 4812.757 kb on - strandat 4812.757 kb on - strandat 4812.757 kb on - strandat 4812.782 kb on - strandat 4812.906 kb on + strand, within AO353_21970at 4812.906 kb on + strandat 4812.907 kb on - strand, within AO353_21970at 4812.907 kb on - strand, within AO353_21970at 4812.907 kb on - strand, within AO353_21970at 4812.918 kb on - strand, within AO353_21970at 4812.918 kb on - strand, within AO353_21970at 4812.918 kb on - strand, within AO353_21970at 4812.918 kb on - strand, within AO353_21970at 4812.951 kb on + strand, within AO353_21970at 4813.056 kb on + strand, within AO353_21970at 4813.056 kb on + strand, within AO353_21970at 4813.056 kb on + strand, within AO353_21970at 4813.056 kb on + strand, within AO353_21970at 4813.057 kb on - strand, within AO353_21970at 4813.057 kb on - strand, within AO353_21970at 4813.057 kb on - strand, within AO353_21970at 4813.057 kb on - strand, within AO353_21970at 4813.140 kb on + strand, within AO353_21970at 4813.141 kb on - strand, within AO353_21970at 4813.141 kb on - strand, within AO353_21970at 4813.141 kb on - strand, within AO353_21970at 4813.141 kb on - strand, within AO353_21970at 4813.353 kb on + strand, within AO353_21970at 4813.354 kb on - strand, within AO353_21970at 4813.407 kb on + strand, within AO353_21970at 4813.407 kb on + strand, within AO353_21970at 4813.407 kb on + strand, within AO353_21970at 4813.407 kb on + strand, within AO353_21970at 4813.407 kb on + strand, within AO353_21970at 4813.408 kb on - strand, within AO353_21970at 4813.408 kb on - strand, within AO353_21970at 4813.408 kb on - strand, within AO353_21970at 4813.408 kb on - strand, within AO353_21970at 4813.408 kb on - strand, within AO353_21970at 4813.408 kb on - strand, within AO353_21970at 4813.408 kb on - strand, within AO353_21970at 4813.408 kb on - strand, within AO353_21970at 4813.408 kb on - strand, within AO353_21970at 4813.408 kb on - strand, within AO353_21970at 4813.437 kb on + strand, within AO353_21970at 4813.437 kb on + strand, within AO353_21970at 4813.536 kb on + strand, within AO353_21970at 4813.536 kb on + strand, within AO353_21970at 4813.536 kb on + strand, within AO353_21970at 4813.629 kb on + strand, within AO353_21970at 4813.630 kb on - strand, within AO353_21970at 4813.647 kb on + strand, within AO353_21970at 4813.647 kb on + strand, within AO353_21970at 4813.647 kb on + strand, within AO353_21970at 4813.647 kb on + strand, within AO353_21970at 4813.647 kb on + strand, within AO353_21970at 4813.647 kb on + strand, within AO353_21970at 4813.648 kb on - strand, within AO353_21970at 4813.648 kb on - strand, within AO353_21970at 4813.648 kb on - strandat 4813.648 kb on - strand, within AO353_21970at 4813.648 kb on - strand, within AO353_21970at 4813.648 kb on - strand, within AO353_21970at 4813.648 kb on - strand, within AO353_21970at 4813.648 kb on - strand, within AO353_21970at 4813.648 kb on - strand, within AO353_21970at 4813.648 kb on - strand, within AO353_21970at 4813.648 kb on - strand, within AO353_21970at 4813.648 kb on - strand, within AO353_21970at 4813.807 kb on + strand, within AO353_21970at 4813.807 kb on + strand, within AO353_21970at 4813.808 kb on - strand, within AO353_21970at 4813.828 kb on - strand, within AO353_21970at 4813.922 kb on + strand, within AO353_21970at 4813.922 kb on + strand, within AO353_21970at 4813.923 kb on - strand, within AO353_21970at 4813.923 kb on - strand, within AO353_21970at 4813.974 kb on - strand, within AO353_21970at 4813.974 kb on - strand, within AO353_21970at 4814.118 kb on + strand, within AO353_21970at 4814.118 kb on + strand, within AO353_21970at 4814.118 kb on + strand, within AO353_21970at 4814.118 kb on + strand, within AO353_21970at 4814.118 kb on + strand, within AO353_21970at 4814.119 kb on - strand, within AO353_21970at 4814.119 kb on - strand, within AO353_21970at 4814.119 kb on - strand, within AO353_21970at 4814.122 kb on + strand, within AO353_21970at 4814.122 kb on + strand, within AO353_21970at 4814.122 kb on + strand, within AO353_21970at 4814.122 kb on + strand, within AO353_21970at 4814.122 kb on + strand, within AO353_21970at 4814.122 kb on + strand, within AO353_21970at 4814.122 kb on + strand, within AO353_21970at 4814.122 kb on + strand, within AO353_21970at 4814.122 kb on + strand, within AO353_21970at 4814.122 kb on + strand, within AO353_21970at 4814.122 kb on + strand, within AO353_21970at 4814.123 kb on - strand, within AO353_21970at 4814.123 kb on - strand, within AO353_21970at 4814.123 kb on - strand, within AO353_21970at 4814.123 kb on - strand, within AO353_21970at 4814.139 kb on + strand, within AO353_21970at 4814.235 kb on + strand, within AO353_21970at 4814.235 kb on + strand, within AO353_21970at 4814.236 kb on - strand, within AO353_21970at 4814.236 kb on - strand, within AO353_21970at 4814.236 kb on - strand, within AO353_21970at 4814.236 kb on - strand, within AO353_21970at 4814.236 kb on - strand, within AO353_21970at 4814.236 kb on - strand, within AO353_21970at 4814.407 kb on + strandat 4814.407 kb on + strandat 4814.408 kb on - strandat 4814.486 kb on + strandat 4814.486 kb on + strandat 4814.502 kb on + strandat 4814.502 kb on + strandat 4814.503 kb on - strandat 4814.583 kb on + strandat 4814.583 kb on + strandat 4814.584 kb on - strandat 4814.664 kb on + strandat 4814.664 kb on + strandat 4814.665 kb on - strandat 4814.665 kb on - strandat 4814.679 kb on - strandat 4814.802 kb on + strand, within AO353_21975at 4814.827 kb on + strand, within AO353_21975at 4814.827 kb on + strand, within AO353_21975at 4814.827 kb on + strand, within AO353_21975at 4814.828 kb on - strand, within AO353_21975at 4814.828 kb on - strand, within AO353_21975at 4814.828 kb on - strand, within AO353_21975at 4814.921 kb on + strand, within AO353_21975at 4814.921 kb on + strand, within AO353_21975at 4814.921 kb on + strand, within AO353_21975at 4814.922 kb on - strand, within AO353_21975at 4814.922 kb on - strand, within AO353_21975at 4814.929 kb on - strand, within AO353_21975at 4815.066 kb on + strand, within AO353_21975at 4815.066 kb on + strand, within AO353_21975at 4815.066 kb on + strand, within AO353_21975at 4815.066 kb on + strand, within AO353_21975at 4815.066 kb on + strand, within AO353_21975at 4815.066 kb on + strand, within AO353_21975at 4815.067 kb on - strand, within AO353_21975at 4815.067 kb on - strand, within AO353_21975at 4815.067 kb on - strand, within AO353_21975

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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4,811,767 + AO353_21955 0.76 +0.8
4,811,829 + AO353_21955 0.81 +0.6
4,811,829 + AO353_21955 0.81 -0.3
4,811,829 + AO353_21955 0.81 -1.0
4,811,829 + AO353_21955 0.81 -2.2
4,811,829 + AO353_21955 0.81 +0.7
4,811,829 + AO353_21955 0.81 +0.3
4,811,829 + AO353_21955 0.81 +0.3
4,811,829 + AO353_21955 0.81 +0.3
4,811,829 + AO353_21955 0.81 -0.8
4,811,829 + AO353_21955 0.81 +1.0
4,811,830 - AO353_21955 0.81 -0.9
4,811,830 - AO353_21955 0.81 +1.4
4,811,830 - AO353_21955 0.81 -0.2
4,811,830 - AO353_21955 0.81 +0.5
4,811,830 - AO353_21955 0.81 +0.3
4,811,830 - AO353_21955 0.81 +0.3
4,811,830 - AO353_21955 0.81 -0.1
4,811,830 - AO353_21955 0.81 -0.4
4,811,830 - AO353_21955 0.81 +1.4
4,811,830 - AO353_21955 0.81 +1.2
4,811,830 - AO353_21955 0.81 +2.1
4,811,830 - AO353_21955 0.81 -0.3
4,811,830 - AO353_21955 0.81 +0.1
4,811,933 + AO353_21955 0.90 +0.7
4,811,934 - AO353_21955 0.90 +0.4
4,811,934 - AO353_21955 0.90 -0.2
4,811,934 - AO353_21955 0.90 -2.8
4,811,934 - AO353_21955 0.90 +0.6
4,811,960 + +0.9
4,811,960 + +1.0
4,811,961 - -1.7
4,811,961 - -1.3
4,812,393 + -1.2
4,812,394 - -0.9
4,812,505 + AO353_21965 0.36 -0.7
4,812,552 - AO353_21965 0.51 +0.1
4,812,735 + +1.0
4,812,736 - +1.1
4,812,736 - +0.5
4,812,756 + -0.3
4,812,756 + -0.4
4,812,756 + +0.4
4,812,757 - -0.5
4,812,757 - -0.7
4,812,757 - -0.6
4,812,782 - -0.1
4,812,906 + AO353_21970 0.10 +0.1
4,812,906 + -1.4
4,812,907 - AO353_21970 0.10 -0.1
4,812,907 - AO353_21970 0.10 +0.1
4,812,907 - AO353_21970 0.10 +0.8
4,812,918 - AO353_21970 0.11 -0.8
4,812,918 - AO353_21970 0.11 -0.5
4,812,918 - AO353_21970 0.11 +1.0
4,812,918 - AO353_21970 0.11 -0.4
4,812,951 + AO353_21970 0.13 +1.0
4,813,056 + AO353_21970 0.19 -1.2
4,813,056 + AO353_21970 0.19 +0.6
4,813,056 + AO353_21970 0.19 +1.4
4,813,056 + AO353_21970 0.19 -0.3
4,813,057 - AO353_21970 0.19 +0.6
4,813,057 - AO353_21970 0.19 +0.5
4,813,057 - AO353_21970 0.19 -0.8
4,813,057 - AO353_21970 0.19 +2.2
4,813,140 + AO353_21970 0.24 -0.2
4,813,141 - AO353_21970 0.24 +0.1
4,813,141 - AO353_21970 0.24 +0.5
4,813,141 - AO353_21970 0.24 -0.8
4,813,141 - AO353_21970 0.24 +0.6
4,813,353 + AO353_21970 0.37 -1.1
4,813,354 - AO353_21970 0.37 +0.6
4,813,407 + AO353_21970 0.40 +0.5
4,813,407 + AO353_21970 0.40 -0.5
4,813,407 + AO353_21970 0.40 +0.7
4,813,407 + AO353_21970 0.40 -0.7
4,813,407 + AO353_21970 0.40 -0.7
4,813,408 - AO353_21970 0.40 +0.6
4,813,408 - AO353_21970 0.40 -0.4
4,813,408 - AO353_21970 0.40 -0.4
4,813,408 - AO353_21970 0.40 +0.4
4,813,408 - AO353_21970 0.40 -2.7
4,813,408 - AO353_21970 0.40 -0.8
4,813,408 - AO353_21970 0.40 +1.0
4,813,408 - AO353_21970 0.40 -0.7
4,813,408 - AO353_21970 0.40 -2.7
4,813,408 - AO353_21970 0.40 +0.5
4,813,437 + AO353_21970 0.42 -1.4
4,813,437 + AO353_21970 0.42 +0.9
4,813,536 + AO353_21970 0.48 -1.3
4,813,536 + AO353_21970 0.48 -0.1
4,813,536 + AO353_21970 0.48 -0.0
4,813,629 + AO353_21970 0.53 -0.7
4,813,630 - AO353_21970 0.53 -0.4
4,813,647 + AO353_21970 0.54 +0.3
4,813,647 + AO353_21970 0.54 +0.1
4,813,647 + AO353_21970 0.54 -0.4
4,813,647 + AO353_21970 0.54 +0.4
4,813,647 + AO353_21970 0.54 -2.2
4,813,647 + AO353_21970 0.54 -0.4
4,813,648 - AO353_21970 0.54 -1.9
4,813,648 - AO353_21970 0.54 +0.6
4,813,648 - +3.6
4,813,648 - AO353_21970 0.54 +0.0
4,813,648 - AO353_21970 0.54 -0.9
4,813,648 - AO353_21970 0.54 -0.2
4,813,648 - AO353_21970 0.54 -0.4
4,813,648 - AO353_21970 0.54 -0.4
4,813,648 - AO353_21970 0.54 +1.6
4,813,648 - AO353_21970 0.54 +0.4
4,813,648 - AO353_21970 0.54 +1.4
4,813,648 - AO353_21970 0.54 -0.5
4,813,807 + AO353_21970 0.64 +1.5
4,813,807 + AO353_21970 0.64 +0.0
4,813,808 - AO353_21970 0.64 -2.2
4,813,828 - AO353_21970 0.65 -0.9
4,813,922 + AO353_21970 0.70 +1.0
4,813,922 + AO353_21970 0.70 -0.4
4,813,923 - AO353_21970 0.70 +0.9
4,813,923 - AO353_21970 0.70 -0.4
4,813,974 - AO353_21970 0.73 -0.7
4,813,974 - AO353_21970 0.73 -0.9
4,814,118 + AO353_21970 0.82 -0.4
4,814,118 + AO353_21970 0.82 -0.7
4,814,118 + AO353_21970 0.82 +1.1
4,814,118 + AO353_21970 0.82 -0.4
4,814,118 + AO353_21970 0.82 -0.4
4,814,119 - AO353_21970 0.82 -2.2
4,814,119 - AO353_21970 0.82 -0.7
4,814,119 - AO353_21970 0.82 +0.8
4,814,122 + AO353_21970 0.82 -1.0
4,814,122 + AO353_21970 0.82 -0.5
4,814,122 + AO353_21970 0.82 -1.7
4,814,122 + AO353_21970 0.82 +0.8
4,814,122 + AO353_21970 0.82 -0.0
4,814,122 + AO353_21970 0.82 +0.3
4,814,122 + AO353_21970 0.82 -0.7
4,814,122 + AO353_21970 0.82 +0.6
4,814,122 + AO353_21970 0.82 -1.2
4,814,122 + AO353_21970 0.82 -1.5
4,814,122 + AO353_21970 0.82 +0.1
4,814,123 - AO353_21970 0.82 +0.6
4,814,123 - AO353_21970 0.82 +0.4
4,814,123 - AO353_21970 0.82 +0.8
4,814,123 - AO353_21970 0.82 -0.1
4,814,139 + AO353_21970 0.83 +0.6
4,814,235 + AO353_21970 0.89 -0.7
4,814,235 + AO353_21970 0.89 +0.3
4,814,236 - AO353_21970 0.89 +0.6
4,814,236 - AO353_21970 0.89 -0.4
4,814,236 - AO353_21970 0.89 +1.1
4,814,236 - AO353_21970 0.89 -0.7
4,814,236 - AO353_21970 0.89 +0.1
4,814,236 - AO353_21970 0.89 -0.1
4,814,407 + +0.5
4,814,407 + +0.3
4,814,408 - -2.4
4,814,486 + +0.3
4,814,486 + -2.7
4,814,502 + -1.1
4,814,502 + -0.4
4,814,503 - +0.5
4,814,583 + -0.9
4,814,583 + +2.1
4,814,584 - -3.3
4,814,664 + -0.2
4,814,664 + +0.5
4,814,665 - -0.2
4,814,665 - -1.3
4,814,679 - +1.0
4,814,802 + AO353_21975 0.22 +0.3
4,814,827 + AO353_21975 0.25 -1.2
4,814,827 + AO353_21975 0.25 -0.8
4,814,827 + AO353_21975 0.25 -0.7
4,814,828 - AO353_21975 0.26 +2.3
4,814,828 - AO353_21975 0.26 +0.9
4,814,828 - AO353_21975 0.26 +2.2
4,814,921 + AO353_21975 0.37 -1.1
4,814,921 + AO353_21975 0.37 -1.5
4,814,921 + AO353_21975 0.37 +0.9
4,814,922 - AO353_21975 0.37 +0.7
4,814,922 - AO353_21975 0.37 -1.2
4,814,929 - AO353_21975 0.38 -1.6
4,815,066 + AO353_21975 0.55 -1.4
4,815,066 + AO353_21975 0.55 -0.5
4,815,066 + AO353_21975 0.55 +1.6
4,815,066 + AO353_21975 0.55 -0.9
4,815,066 + AO353_21975 0.55 -0.1
4,815,066 + AO353_21975 0.55 -0.6
4,815,067 - AO353_21975 0.55 -2.1
4,815,067 - AO353_21975 0.55 -0.6
4,815,067 - AO353_21975 0.55 -1.2

Or see this region's nucleotide sequence