Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_13775

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_13770 and AO353_13775 overlap by 4 nucleotidesAO353_13775 and AO353_13780 are separated by 75 nucleotidesAO353_13780 and AO353_13785 are separated by 125 nucleotides AO353_13770: AO353_13770 - histidine kinase, at 3,059,280 to 3,062,045 _13770 AO353_13775: AO353_13775 - pilus assembly protein TadE, at 3,062,042 to 3,062,488 _13775 AO353_13780: AO353_13780 - peptidase A24, at 3,062,564 to 3,063,034 _13780 AO353_13785: AO353_13785 - LuxR family transcriptional regulator, at 3,063,160 to 3,063,927 _13785 Position (kb) 3062 3063Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3061.162 kb on - strand, within AO353_13770at 3061.249 kb on + strand, within AO353_13770at 3061.250 kb on - strand, within AO353_13770at 3061.316 kb on + strand, within AO353_13770at 3061.316 kb on + strand, within AO353_13770at 3061.385 kb on + strand, within AO353_13770at 3061.385 kb on + strand, within AO353_13770at 3061.385 kb on + strand, within AO353_13770at 3061.386 kb on - strand, within AO353_13770at 3061.386 kb on - strand, within AO353_13770at 3061.386 kb on - strand, within AO353_13770at 3061.388 kb on + strand, within AO353_13770at 3061.462 kb on + strand, within AO353_13770at 3061.462 kb on + strand, within AO353_13770at 3061.462 kb on + strand, within AO353_13770at 3061.463 kb on - strand, within AO353_13770at 3061.463 kb on - strand, within AO353_13770at 3061.463 kb on - strand, within AO353_13770at 3061.463 kb on - strand, within AO353_13770at 3061.463 kb on - strand, within AO353_13770at 3061.804 kb on - strandat 3061.840 kb on + strandat 3061.841 kb on - strandat 3061.947 kb on + strandat 3061.947 kb on + strandat 3061.975 kb on + strandat 3062.151 kb on + strand, within AO353_13775at 3062.151 kb on + strand, within AO353_13775at 3062.172 kb on - strand, within AO353_13775at 3062.172 kb on - strand, within AO353_13775at 3062.190 kb on + strand, within AO353_13775at 3062.190 kb on + strand, within AO353_13775at 3062.190 kb on + strand, within AO353_13775at 3062.190 kb on + strand, within AO353_13775at 3062.190 kb on + strand, within AO353_13775at 3062.191 kb on - strand, within AO353_13775at 3062.191 kb on - strand, within AO353_13775at 3062.191 kb on - strand, within AO353_13775at 3062.191 kb on - strand, within AO353_13775at 3062.191 kb on - strand, within AO353_13775at 3062.191 kb on - strand, within AO353_13775at 3062.191 kb on - strand, within AO353_13775at 3062.258 kb on + strand, within AO353_13775at 3062.259 kb on - strand, within AO353_13775at 3062.259 kb on - strand, within AO353_13775at 3062.259 kb on - strand, within AO353_13775at 3062.295 kb on + strand, within AO353_13775at 3062.295 kb on + strand, within AO353_13775at 3062.296 kb on - strand, within AO353_13775at 3062.388 kb on + strand, within AO353_13775at 3062.389 kb on - strand, within AO353_13775at 3062.403 kb on + strand, within AO353_13775at 3062.403 kb on + strand, within AO353_13775at 3062.404 kb on - strand, within AO353_13775at 3062.404 kb on - strand, within AO353_13775at 3062.404 kb on - strand, within AO353_13775at 3062.404 kb on - strand, within AO353_13775at 3062.513 kb on + strandat 3062.513 kb on + strandat 3062.513 kb on + strandat 3062.513 kb on + strandat 3062.514 kb on - strandat 3062.514 kb on - strandat 3062.520 kb on + strandat 3062.521 kb on - strandat 3062.521 kb on - strandat 3062.521 kb on - strandat 3062.521 kb on - strandat 3062.521 kb on - strandat 3062.521 kb on - strandat 3062.521 kb on - strandat 3062.521 kb on - strandat 3062.521 kb on - strandat 3062.528 kb on + strandat 3062.528 kb on + strandat 3062.528 kb on + strandat 3062.528 kb on + strandat 3062.528 kb on + strandat 3062.528 kb on + strandat 3062.528 kb on + strandat 3062.528 kb on + strandat 3062.528 kb on + strandat 3062.528 kb on + strandat 3062.528 kb on + strandat 3062.528 kb on + strandat 3062.529 kb on - strandat 3062.529 kb on - strandat 3062.529 kb on - strandat 3062.529 kb on - strandat 3062.529 kb on - strandat 3062.529 kb on - strandat 3062.529 kb on - strandat 3062.529 kb on - strandat 3062.529 kb on - strandat 3062.529 kb on - strandat 3062.529 kb on - strandat 3062.529 kb on - strandat 3062.529 kb on - strandat 3062.629 kb on + strand, within AO353_13780at 3062.629 kb on + strand, within AO353_13780at 3062.629 kb on + strand, within AO353_13780at 3062.629 kb on + strand, within AO353_13780at 3062.629 kb on + strand, within AO353_13780at 3062.630 kb on - strand, within AO353_13780at 3062.630 kb on - strand, within AO353_13780at 3062.630 kb on - strand, within AO353_13780at 3062.675 kb on + strand, within AO353_13780at 3062.675 kb on + strand, within AO353_13780at 3062.675 kb on + strand, within AO353_13780at 3062.675 kb on + strand, within AO353_13780at 3062.675 kb on + strand, within AO353_13780at 3062.675 kb on + strand, within AO353_13780at 3062.675 kb on + strand, within AO353_13780at 3062.676 kb on - strand, within AO353_13780at 3062.676 kb on - strand, within AO353_13780at 3062.676 kb on - strand, within AO353_13780at 3062.676 kb on - strand, within AO353_13780at 3062.676 kb on - strand, within AO353_13780at 3062.676 kb on - strand, within AO353_13780at 3062.755 kb on + strand, within AO353_13780at 3062.755 kb on + strand, within AO353_13780at 3062.755 kb on + strand, within AO353_13780at 3062.755 kb on + strand, within AO353_13780at 3062.755 kb on + strand, within AO353_13780at 3062.755 kb on + strand, within AO353_13780at 3062.755 kb on + strand, within AO353_13780at 3062.755 kb on + strand, within AO353_13780at 3062.756 kb on - strand, within AO353_13780at 3062.756 kb on - strand, within AO353_13780at 3062.889 kb on + strand, within AO353_13780at 3062.917 kb on + strand, within AO353_13780at 3062.918 kb on - strand, within AO353_13780at 3062.918 kb on - strand, within AO353_13780at 3062.918 kb on - strand, within AO353_13780at 3062.918 kb on - strand, within AO353_13780at 3062.918 kb on - strand, within AO353_13780at 3062.949 kb on - strand, within AO353_13780at 3063.050 kb on + strandat 3063.050 kb on + strandat 3063.050 kb on + strandat 3063.050 kb on + strandat 3063.051 kb on - strandat 3063.051 kb on - strandat 3063.051 kb on - strandat 3063.051 kb on - strandat 3063.051 kb on - strandat 3063.051 kb on - strandat 3063.051 kb on - strandat 3063.051 kb on - strandat 3063.051 kb on - strandat 3063.056 kb on + strandat 3063.056 kb on + strandat 3063.057 kb on - strandat 3063.057 kb on - strandat 3063.057 kb on - strandat 3063.060 kb on + strandat 3063.060 kb on + strandat 3063.060 kb on + strandat 3063.060 kb on + strandat 3063.060 kb on + strandat 3063.060 kb on + strandat 3063.060 kb on + strandat 3063.060 kb on + strandat 3063.060 kb on + strandat 3063.060 kb on + strandat 3063.060 kb on + strandat 3063.060 kb on + strandat 3063.060 kb on + strandat 3063.060 kb on + strandat 3063.060 kb on + strandat 3063.060 kb on + strandat 3063.060 kb on + strandat 3063.060 kb on + strandat 3063.060 kb on + strandat 3063.060 kb on + strandat 3063.061 kb on - strandat 3063.061 kb on - strandat 3063.061 kb on - strandat 3063.061 kb on - strandat 3063.061 kb on - strandat 3063.061 kb on - strandat 3063.061 kb on - strandat 3063.061 kb on - strandat 3063.061 kb on - strandat 3063.061 kb on - strandat 3063.061 kb on - strandat 3063.061 kb on - strandat 3063.061 kb on - strandat 3063.061 kb on - strandat 3063.061 kb on - strandat 3063.061 kb on - strandat 3063.061 kb on - strandat 3063.061 kb on - strandat 3063.061 kb on - strandat 3063.061 kb on - strandat 3063.061 kb on - strandat 3063.061 kb on - strandat 3063.064 kb on + strandat 3063.064 kb on + strandat 3063.064 kb on + strandat 3063.064 kb on + strandat 3063.064 kb on + strandat 3063.064 kb on + strandat 3063.064 kb on + strandat 3063.064 kb on + strandat 3063.064 kb on + strandat 3063.064 kb on + strandat 3063.064 kb on + strandat 3063.064 kb on + strandat 3063.064 kb on + strandat 3063.064 kb on + strandat 3063.064 kb on + strandat 3063.064 kb on + strandat 3063.064 kb on + strandat 3063.064 kb on + strandat 3063.064 kb on + strandat 3063.064 kb on + strandat 3063.064 kb on + strandat 3063.064 kb on + strandat 3063.064 kb on + strandat 3063.064 kb on + strandat 3063.064 kb on + strandat 3063.065 kb on - strandat 3063.065 kb on - strandat 3063.065 kb on - strandat 3063.065 kb on - strandat 3063.065 kb on - strandat 3063.065 kb on - strandat 3063.065 kb on - strandat 3063.065 kb on - strandat 3063.065 kb on - strandat 3063.065 kb on - strandat 3063.065 kb on - strandat 3063.065 kb on - strandat 3063.065 kb on - strandat 3063.065 kb on - strandat 3063.065 kb on - strandat 3063.065 kb on - strandat 3063.065 kb on - strandat 3063.065 kb on - strandat 3063.065 kb on - strandat 3063.067 kb on + strandat 3063.067 kb on + strandat 3063.067 kb on + strandat 3063.068 kb on - strandat 3063.068 kb on - strandat 3063.075 kb on + strandat 3063.075 kb on + strandat 3063.075 kb on + strandat 3063.075 kb on + strandat 3063.075 kb on + strandat 3063.075 kb on + strandat 3063.076 kb on - strandat 3063.076 kb on - strandat 3063.081 kb on + strandat 3063.082 kb on - strandat 3063.100 kb on + strandat 3063.100 kb on + strandat 3063.100 kb on + strandat 3063.101 kb on - strandat 3063.101 kb on - strandat 3063.101 kb on - strandat 3063.183 kb on - strandat 3063.484 kb on + strand, within AO353_13785at 3063.485 kb on - strand, within AO353_13785at 3063.485 kb on - strand, within AO353_13785at 3063.485 kb on - strand, within AO353_13785at 3063.487 kb on + strand, within AO353_13785at 3063.487 kb on + strand, within AO353_13785at 3063.487 kb on + strand, within AO353_13785at 3063.488 kb on - strand, within AO353_13785at 3063.488 kb on - strand, within AO353_13785at 3063.488 kb on - strand, within AO353_13785at 3063.488 kb on - strand, within AO353_13785

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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3,061,162 - AO353_13770 0.68 +0.1
3,061,249 + AO353_13770 0.71 +0.0
3,061,250 - AO353_13770 0.71 -0.6
3,061,316 + AO353_13770 0.74 +1.0
3,061,316 + AO353_13770 0.74 +0.8
3,061,385 + AO353_13770 0.76 -0.5
3,061,385 + AO353_13770 0.76 +0.6
3,061,385 + AO353_13770 0.76 +0.6
3,061,386 - AO353_13770 0.76 -0.4
3,061,386 - AO353_13770 0.76 +0.1
3,061,386 - AO353_13770 0.76 -0.5
3,061,388 + AO353_13770 0.76 +0.4
3,061,462 + AO353_13770 0.79 +0.3
3,061,462 + AO353_13770 0.79 +0.3
3,061,462 + AO353_13770 0.79 +0.3
3,061,463 - AO353_13770 0.79 +0.5
3,061,463 - AO353_13770 0.79 +1.8
3,061,463 - AO353_13770 0.79 -2.5
3,061,463 - AO353_13770 0.79 -1.1
3,061,463 - AO353_13770 0.79 +0.2
3,061,804 - -1.4
3,061,840 + -0.8
3,061,841 - -0.7
3,061,947 + +0.1
3,061,947 + -0.9
3,061,975 + +1.0
3,062,151 + AO353_13775 0.24 +0.8
3,062,151 + AO353_13775 0.24 +0.5
3,062,172 - AO353_13775 0.29 +0.7
3,062,172 - AO353_13775 0.29 -1.0
3,062,190 + AO353_13775 0.33 +0.4
3,062,190 + AO353_13775 0.33 +0.9
3,062,190 + AO353_13775 0.33 +2.0
3,062,190 + AO353_13775 0.33 +2.3
3,062,190 + AO353_13775 0.33 +0.9
3,062,191 - AO353_13775 0.33 +0.4
3,062,191 - AO353_13775 0.33 +0.3
3,062,191 - AO353_13775 0.33 -0.5
3,062,191 - AO353_13775 0.33 -0.1
3,062,191 - AO353_13775 0.33 +0.1
3,062,191 - AO353_13775 0.33 +1.5
3,062,191 - AO353_13775 0.33 -0.8
3,062,258 + AO353_13775 0.48 -0.3
3,062,259 - AO353_13775 0.49 +1.3
3,062,259 - AO353_13775 0.49 +0.6
3,062,259 - AO353_13775 0.49 +0.4
3,062,295 + AO353_13775 0.57 -1.4
3,062,295 + AO353_13775 0.57 +0.4
3,062,296 - AO353_13775 0.57 -0.3
3,062,388 + AO353_13775 0.77 -0.3
3,062,389 - AO353_13775 0.78 -0.2
3,062,403 + AO353_13775 0.81 +0.5
3,062,403 + AO353_13775 0.81 -1.2
3,062,404 - AO353_13775 0.81 +0.4
3,062,404 - AO353_13775 0.81 +0.3
3,062,404 - AO353_13775 0.81 -0.5
3,062,404 - AO353_13775 0.81 +0.3
3,062,513 + -1.5
3,062,513 + +0.4
3,062,513 + -1.1
3,062,513 + +0.2
3,062,514 - -0.6
3,062,514 - +0.8
3,062,520 + +0.9
3,062,521 - -0.2
3,062,521 - -1.2
3,062,521 - +1.7
3,062,521 - -0.4
3,062,521 - -1.8
3,062,521 - -1.4
3,062,521 - +0.9
3,062,521 - +0.4
3,062,521 - -1.4
3,062,528 + -0.2
3,062,528 + +0.4
3,062,528 + -1.5
3,062,528 + +0.6
3,062,528 + -0.9
3,062,528 + -0.3
3,062,528 + +0.3
3,062,528 + +1.0
3,062,528 + -0.1
3,062,528 + -0.2
3,062,528 + -1.2
3,062,528 + +0.5
3,062,529 - -0.9
3,062,529 - -0.0
3,062,529 - +0.3
3,062,529 - +1.0
3,062,529 - -1.0
3,062,529 - +0.6
3,062,529 - +0.5
3,062,529 - +0.2
3,062,529 - -1.2
3,062,529 - -1.5
3,062,529 - +1.4
3,062,529 - -1.4
3,062,529 - +1.0
3,062,629 + AO353_13780 0.14 -1.0
3,062,629 + AO353_13780 0.14 +0.8
3,062,629 + AO353_13780 0.14 -1.0
3,062,629 + AO353_13780 0.14 -2.1
3,062,629 + AO353_13780 0.14 -1.2
3,062,630 - AO353_13780 0.14 -1.9
3,062,630 - AO353_13780 0.14 -1.6
3,062,630 - AO353_13780 0.14 +0.3
3,062,675 + AO353_13780 0.24 -1.2
3,062,675 + AO353_13780 0.24 +1.3
3,062,675 + AO353_13780 0.24 -0.3
3,062,675 + AO353_13780 0.24 +0.9
3,062,675 + AO353_13780 0.24 +0.9
3,062,675 + AO353_13780 0.24 +0.7
3,062,675 + AO353_13780 0.24 +0.3
3,062,676 - AO353_13780 0.24 +1.1
3,062,676 - AO353_13780 0.24 -0.5
3,062,676 - AO353_13780 0.24 +0.7
3,062,676 - AO353_13780 0.24 +0.2
3,062,676 - AO353_13780 0.24 -0.2
3,062,676 - AO353_13780 0.24 -1.6
3,062,755 + AO353_13780 0.41 -0.4
3,062,755 + AO353_13780 0.41 -0.7
3,062,755 + AO353_13780 0.41 -1.1
3,062,755 + AO353_13780 0.41 -0.2
3,062,755 + AO353_13780 0.41 -1.4
3,062,755 + AO353_13780 0.41 -1.8
3,062,755 + AO353_13780 0.41 +0.1
3,062,755 + AO353_13780 0.41 +1.3
3,062,756 - AO353_13780 0.41 +0.0
3,062,756 - AO353_13780 0.41 +0.2
3,062,889 + AO353_13780 0.69 -1.6
3,062,917 + AO353_13780 0.75 +0.1
3,062,918 - AO353_13780 0.75 -0.0
3,062,918 - AO353_13780 0.75 -0.6
3,062,918 - AO353_13780 0.75 -1.3
3,062,918 - AO353_13780 0.75 +1.0
3,062,918 - AO353_13780 0.75 -0.7
3,062,949 - AO353_13780 0.82 -0.8
3,063,050 + +0.4
3,063,050 + +1.1
3,063,050 + +0.2
3,063,050 + -0.8
3,063,051 - -2.9
3,063,051 - +0.4
3,063,051 - -1.2
3,063,051 - -1.2
3,063,051 - +0.4
3,063,051 - +0.5
3,063,051 - +2.1
3,063,051 - +1.1
3,063,051 - -1.9
3,063,056 + +0.4
3,063,056 + -1.7
3,063,057 - +1.4
3,063,057 - +0.9
3,063,057 - -0.0
3,063,060 + +1.0
3,063,060 + +0.7
3,063,060 + +0.3
3,063,060 + +0.2
3,063,060 + +0.6
3,063,060 + +0.1
3,063,060 + -1.1
3,063,060 + -1.4
3,063,060 + -0.9
3,063,060 + -1.5
3,063,060 + -2.7
3,063,060 + +0.0
3,063,060 + -0.1
3,063,060 + +0.1
3,063,060 + -1.1
3,063,060 + -1.0
3,063,060 + +2.2
3,063,060 + +0.5
3,063,060 + +0.3
3,063,060 + +0.1
3,063,061 - -0.6
3,063,061 - -1.4
3,063,061 - -0.2
3,063,061 - -0.5
3,063,061 - +1.3
3,063,061 - +1.3
3,063,061 - +1.1
3,063,061 - +0.2
3,063,061 - +0.4
3,063,061 - +0.1
3,063,061 - +0.5
3,063,061 - -1.1
3,063,061 - +0.0
3,063,061 - -0.6
3,063,061 - -1.5
3,063,061 - +1.3
3,063,061 - +0.3
3,063,061 - +0.3
3,063,061 - +0.5
3,063,061 - -0.5
3,063,061 - +0.5
3,063,061 - +1.2
3,063,064 + -2.2
3,063,064 + -0.7
3,063,064 + -1.9
3,063,064 + +0.7
3,063,064 + +0.6
3,063,064 + +1.0
3,063,064 + +0.7
3,063,064 + -0.9
3,063,064 + -0.1
3,063,064 + -1.0
3,063,064 + +0.1
3,063,064 + +2.8
3,063,064 + +0.0
3,063,064 + -1.3
3,063,064 + +0.6
3,063,064 + +1.1
3,063,064 + -0.2
3,063,064 + +0.6
3,063,064 + +0.3
3,063,064 + -0.4
3,063,064 + -0.4
3,063,064 + -0.6
3,063,064 + -3.0
3,063,064 + +0.6
3,063,064 + +0.3
3,063,065 - +0.4
3,063,065 - +0.8
3,063,065 - -0.1
3,063,065 - +0.6
3,063,065 - -1.2
3,063,065 - +0.9
3,063,065 - +0.7
3,063,065 - +0.5
3,063,065 - +1.0
3,063,065 - +0.7
3,063,065 - +0.5
3,063,065 - -0.1
3,063,065 - -0.5
3,063,065 - +1.0
3,063,065 - -0.4
3,063,065 - -1.2
3,063,065 - -0.4
3,063,065 - -0.0
3,063,065 - +0.9
3,063,067 + +0.7
3,063,067 + -0.5
3,063,067 + -0.4
3,063,068 - +0.4
3,063,068 - +0.5
3,063,075 + +1.5
3,063,075 + +1.4
3,063,075 + -1.2
3,063,075 + -1.0
3,063,075 + -0.3
3,063,075 + +1.4
3,063,076 - +0.2
3,063,076 - -0.1
3,063,081 + -0.4
3,063,082 - -0.4
3,063,100 + -1.1
3,063,100 + +1.0
3,063,100 + +1.4
3,063,101 - +1.0
3,063,101 - -1.0
3,063,101 - +0.5
3,063,183 - +0.1
3,063,484 + AO353_13785 0.42 -1.3
3,063,485 - AO353_13785 0.42 +1.1
3,063,485 - AO353_13785 0.42 -0.8
3,063,485 - AO353_13785 0.42 +0.5
3,063,487 + AO353_13785 0.43 -1.0
3,063,487 + AO353_13785 0.43 +1.2
3,063,487 + AO353_13785 0.43 -1.4
3,063,488 - AO353_13785 0.43 -2.5
3,063,488 - AO353_13785 0.43 -0.9
3,063,488 - AO353_13785 0.43 +0.8
3,063,488 - AO353_13785 0.43 -0.5

Or see this region's nucleotide sequence