Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_07830

Experiment: L-Phenylalanine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_07820 and AO353_07825 overlap by 4 nucleotidesAO353_07825 and AO353_07830 are separated by 230 nucleotidesAO353_07830 and AO353_07835 are separated by 144 nucleotides AO353_07820: AO353_07820 - branched-chain amino acid ABC transporter permease, at 1,725,114 to 1,725,839 _07820 AO353_07825: AO353_07825 - branched-chain amino acid ABC transporter, at 1,725,836 to 1,726,186 _07825 AO353_07830: AO353_07830 - dimethylmenaquinone methyltransferase, at 1,726,417 to 1,727,112 _07830 AO353_07835: AO353_07835 - peptidase C69, at 1,727,257 to 1,728,699 _07835 Position (kb) 1726 1727 1728Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1725.470 kb on + strand, within AO353_07820at 1725.471 kb on - strand, within AO353_07820at 1725.520 kb on - strand, within AO353_07820at 1725.570 kb on + strand, within AO353_07820at 1725.570 kb on + strand, within AO353_07820at 1725.570 kb on + strand, within AO353_07820at 1725.570 kb on + strand, within AO353_07820at 1725.571 kb on - strand, within AO353_07820at 1725.571 kb on - strand, within AO353_07820at 1725.571 kb on - strand, within AO353_07820at 1725.571 kb on - strand, within AO353_07820at 1725.571 kb on - strand, within AO353_07820at 1725.571 kb on - strand, within AO353_07820at 1725.571 kb on - strand, within AO353_07820at 1725.575 kb on - strand, within AO353_07820at 1725.596 kb on + strand, within AO353_07820at 1725.597 kb on - strand, within AO353_07820at 1725.631 kb on + strand, within AO353_07820at 1725.637 kb on + strand, within AO353_07820at 1725.637 kb on + strand, within AO353_07820at 1725.681 kb on + strand, within AO353_07820at 1725.681 kb on + strand, within AO353_07820at 1725.682 kb on - strand, within AO353_07820at 1725.682 kb on - strand, within AO353_07820at 1725.682 kb on - strand, within AO353_07820at 1725.684 kb on + strand, within AO353_07820at 1725.685 kb on - strand, within AO353_07820at 1725.685 kb on - strand, within AO353_07820at 1725.691 kb on + strand, within AO353_07820at 1725.731 kb on + strand, within AO353_07820at 1725.750 kb on + strand, within AO353_07820at 1725.793 kb on + strandat 1725.793 kb on + strandat 1725.843 kb on + strandat 1725.844 kb on - strandat 1725.955 kb on + strand, within AO353_07825at 1725.962 kb on + strand, within AO353_07825at 1725.963 kb on - strand, within AO353_07825at 1725.963 kb on - strand, within AO353_07825at 1725.964 kb on + strand, within AO353_07825at 1725.964 kb on + strand, within AO353_07825at 1725.964 kb on + strand, within AO353_07825at 1725.964 kb on + strand, within AO353_07825at 1726.084 kb on + strand, within AO353_07825at 1726.084 kb on + strand, within AO353_07825at 1726.084 kb on + strand, within AO353_07825at 1726.084 kb on + strand, within AO353_07825at 1726.084 kb on + strand, within AO353_07825at 1726.085 kb on - strand, within AO353_07825at 1726.085 kb on - strand, within AO353_07825at 1726.148 kb on + strand, within AO353_07825at 1726.148 kb on + strand, within AO353_07825at 1726.149 kb on - strand, within AO353_07825at 1726.149 kb on - strand, within AO353_07825at 1726.149 kb on - strand, within AO353_07825at 1726.167 kb on - strandat 1726.167 kb on - strandat 1726.184 kb on + strandat 1726.184 kb on + strandat 1726.184 kb on + strandat 1726.185 kb on - strandat 1726.185 kb on - strandat 1726.221 kb on - strandat 1726.260 kb on + strandat 1726.260 kb on + strandat 1726.289 kb on - strandat 1726.338 kb on + strandat 1726.338 kb on + strandat 1726.338 kb on + strandat 1726.339 kb on - strandat 1726.339 kb on - strandat 1726.343 kb on + strandat 1726.343 kb on + strandat 1726.343 kb on + strandat 1726.343 kb on + strandat 1726.343 kb on + strandat 1726.343 kb on + strandat 1726.344 kb on - strandat 1726.344 kb on - strandat 1726.344 kb on - strandat 1726.344 kb on - strandat 1726.364 kb on - strandat 1726.364 kb on - strandat 1726.364 kb on - strandat 1726.364 kb on - strandat 1726.412 kb on + strandat 1726.412 kb on + strandat 1726.412 kb on + strandat 1726.412 kb on + strandat 1726.412 kb on + strandat 1726.412 kb on + strandat 1726.412 kb on + strandat 1726.413 kb on - strandat 1726.413 kb on - strandat 1726.413 kb on - strandat 1726.413 kb on - strandat 1726.413 kb on - strandat 1726.413 kb on - strandat 1726.413 kb on - strandat 1726.475 kb on + strandat 1726.475 kb on + strandat 1726.475 kb on + strandat 1726.475 kb on + strandat 1726.475 kb on + strandat 1726.475 kb on + strandat 1726.475 kb on + strandat 1726.475 kb on + strandat 1726.475 kb on + strandat 1726.475 kb on + strandat 1726.475 kb on + strandat 1726.475 kb on + strandat 1726.475 kb on + strandat 1726.475 kb on + strandat 1726.476 kb on - strandat 1726.476 kb on - strandat 1726.476 kb on - strandat 1726.476 kb on - strandat 1726.476 kb on - strandat 1726.476 kb on - strandat 1726.476 kb on - strandat 1726.476 kb on - strandat 1726.476 kb on - strandat 1726.476 kb on - strandat 1726.476 kb on - strandat 1726.476 kb on - strandat 1726.476 kb on - strandat 1726.476 kb on - strandat 1726.476 kb on - strandat 1726.476 kb on - strandat 1726.476 kb on - strandat 1726.476 kb on - strandat 1726.476 kb on - strandat 1726.476 kb on - strandat 1726.476 kb on - strandat 1726.476 kb on - strandat 1726.476 kb on - strandat 1726.834 kb on + strand, within AO353_07830at 1726.835 kb on - strand, within AO353_07830at 1726.850 kb on + strand, within AO353_07830at 1726.850 kb on + strand, within AO353_07830at 1726.850 kb on + strand, within AO353_07830at 1726.851 kb on - strand, within AO353_07830at 1726.892 kb on + strand, within AO353_07830at 1726.893 kb on - strand, within AO353_07830at 1726.961 kb on + strand, within AO353_07830at 1726.961 kb on + strand, within AO353_07830at 1726.961 kb on + strand, within AO353_07830at 1726.962 kb on - strand, within AO353_07830at 1726.962 kb on - strand, within AO353_07830at 1726.962 kb on - strand, within AO353_07830at 1726.962 kb on - strand, within AO353_07830at 1727.031 kb on + strand, within AO353_07830at 1727.031 kb on + strand, within AO353_07830at 1727.110 kb on + strandat 1727.110 kb on + strandat 1727.192 kb on + strandat 1727.193 kb on - strandat 1727.193 kb on - strandat 1727.193 kb on - strandat 1727.193 kb on - strandat 1727.332 kb on + strandat 1727.332 kb on + strandat 1727.332 kb on + strandat 1727.332 kb on + strandat 1727.332 kb on + strandat 1727.333 kb on - strandat 1727.333 kb on - strandat 1727.333 kb on - strandat 1727.353 kb on + strandat 1727.353 kb on + strandat 1727.353 kb on + strandat 1727.353 kb on + strandat 1727.354 kb on - strandat 1727.354 kb on - strandat 1727.354 kb on - strandat 1727.354 kb on - strandat 1727.354 kb on - strandat 1727.446 kb on + strand, within AO353_07835at 1727.446 kb on + strand, within AO353_07835at 1727.581 kb on + strand, within AO353_07835at 1727.582 kb on - strand, within AO353_07835at 1727.582 kb on - strand, within AO353_07835at 1727.629 kb on + strand, within AO353_07835at 1727.629 kb on + strand, within AO353_07835at 1727.629 kb on + strand, within AO353_07835at 1727.629 kb on + strand, within AO353_07835at 1727.630 kb on - strand, within AO353_07835at 1727.725 kb on + strand, within AO353_07835at 1727.725 kb on + strand, within AO353_07835at 1727.725 kb on + strand, within AO353_07835at 1727.725 kb on + strand, within AO353_07835at 1727.726 kb on - strand, within AO353_07835at 1727.798 kb on - strand, within AO353_07835at 1728.058 kb on + strand, within AO353_07835at 1728.059 kb on - strand, within AO353_07835at 1728.059 kb on - strand, within AO353_07835at 1728.059 kb on - strand, within AO353_07835at 1728.059 kb on - strand, within AO353_07835

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
remove
1,725,470 + AO353_07820 0.49 +0.5
1,725,471 - AO353_07820 0.49 +0.4
1,725,520 - AO353_07820 0.56 -0.8
1,725,570 + AO353_07820 0.63 -0.1
1,725,570 + AO353_07820 0.63 +0.9
1,725,570 + AO353_07820 0.63 +0.9
1,725,570 + AO353_07820 0.63 -0.9
1,725,571 - AO353_07820 0.63 +1.0
1,725,571 - AO353_07820 0.63 -0.1
1,725,571 - AO353_07820 0.63 +1.4
1,725,571 - AO353_07820 0.63 +0.9
1,725,571 - AO353_07820 0.63 -0.4
1,725,571 - AO353_07820 0.63 +0.2
1,725,571 - AO353_07820 0.63 -1.0
1,725,575 - AO353_07820 0.63 +1.5
1,725,596 + AO353_07820 0.66 -1.0
1,725,597 - AO353_07820 0.67 -0.6
1,725,631 + AO353_07820 0.71 +1.7
1,725,637 + AO353_07820 0.72 +1.5
1,725,637 + AO353_07820 0.72 -0.7
1,725,681 + AO353_07820 0.78 +0.3
1,725,681 + AO353_07820 0.78 +1.2
1,725,682 - AO353_07820 0.78 +0.7
1,725,682 - AO353_07820 0.78 -2.9
1,725,682 - AO353_07820 0.78 -0.2
1,725,684 + AO353_07820 0.79 +1.4
1,725,685 - AO353_07820 0.79 -2.4
1,725,685 - AO353_07820 0.79 +0.4
1,725,691 + AO353_07820 0.79 +0.2
1,725,731 + AO353_07820 0.85 -1.6
1,725,750 + AO353_07820 0.88 -0.7
1,725,793 + +0.1
1,725,793 + -0.9
1,725,843 + +0.6
1,725,844 - -1.9
1,725,955 + AO353_07825 0.34 +0.2
1,725,962 + AO353_07825 0.36 +0.1
1,725,963 - AO353_07825 0.36 +0.6
1,725,963 - AO353_07825 0.36 +0.2
1,725,964 + AO353_07825 0.36 +2.0
1,725,964 + AO353_07825 0.36 -0.7
1,725,964 + AO353_07825 0.36 +0.2
1,725,964 + AO353_07825 0.36 -0.9
1,726,084 + AO353_07825 0.71 -0.1
1,726,084 + AO353_07825 0.71 -0.6
1,726,084 + AO353_07825 0.71 +2.5
1,726,084 + AO353_07825 0.71 +0.2
1,726,084 + AO353_07825 0.71 -0.4
1,726,085 - AO353_07825 0.71 +0.2
1,726,085 - AO353_07825 0.71 +0.5
1,726,148 + AO353_07825 0.89 +0.5
1,726,148 + AO353_07825 0.89 -1.6
1,726,149 - AO353_07825 0.89 -0.9
1,726,149 - AO353_07825 0.89 +1.1
1,726,149 - AO353_07825 0.89 +0.1
1,726,167 - +1.0
1,726,167 - +1.1
1,726,184 + +0.1
1,726,184 + +0.4
1,726,184 + -1.1
1,726,185 - +1.0
1,726,185 - +3.8
1,726,221 - +1.0
1,726,260 + +0.6
1,726,260 + +0.2
1,726,289 - +1.0
1,726,338 + +0.2
1,726,338 + +2.4
1,726,338 + +1.1
1,726,339 - -0.1
1,726,339 - -0.9
1,726,343 + +0.4
1,726,343 + +0.7
1,726,343 + +0.7
1,726,343 + +1.2
1,726,343 + -0.9
1,726,343 + -0.1
1,726,344 - +0.6
1,726,344 - -1.1
1,726,344 - +1.0
1,726,344 - +0.1
1,726,364 - +0.7
1,726,364 - +1.4
1,726,364 - +1.7
1,726,364 - -0.6
1,726,412 + +1.0
1,726,412 + -0.5
1,726,412 + -0.4
1,726,412 + +0.2
1,726,412 + -0.3
1,726,412 + +0.6
1,726,412 + +1.2
1,726,413 - +0.2
1,726,413 - -0.5
1,726,413 - -2.2
1,726,413 - +0.8
1,726,413 - -1.0
1,726,413 - -0.7
1,726,413 - -0.9
1,726,475 + +0.4
1,726,475 + -0.2
1,726,475 + +0.5
1,726,475 + +0.4
1,726,475 + +1.5
1,726,475 + +0.2
1,726,475 + +0.8
1,726,475 + -1.6
1,726,475 + +0.2
1,726,475 + +0.7
1,726,475 + -0.7
1,726,475 + -0.2
1,726,475 + +0.4
1,726,475 + +1.6
1,726,476 - +0.8
1,726,476 - -0.5
1,726,476 - +0.1
1,726,476 - +0.9
1,726,476 - +2.0
1,726,476 - -0.4
1,726,476 - +0.9
1,726,476 - -1.4
1,726,476 - +0.6
1,726,476 - +1.6
1,726,476 - +2.3
1,726,476 - -0.3
1,726,476 - +0.2
1,726,476 - +0.1
1,726,476 - +0.6
1,726,476 - +0.4
1,726,476 - +0.1
1,726,476 - -0.1
1,726,476 - +0.1
1,726,476 - +1.4
1,726,476 - -0.9
1,726,476 - -1.2
1,726,476 - -1.5
1,726,834 + AO353_07830 0.60 +1.1
1,726,835 - AO353_07830 0.60 -0.9
1,726,850 + AO353_07830 0.62 -1.4
1,726,850 + AO353_07830 0.62 +0.5
1,726,850 + AO353_07830 0.62 +0.1
1,726,851 - AO353_07830 0.62 +0.3
1,726,892 + AO353_07830 0.68 -1.3
1,726,893 - AO353_07830 0.68 +0.2
1,726,961 + AO353_07830 0.78 -1.1
1,726,961 + AO353_07830 0.78 -1.5
1,726,961 + AO353_07830 0.78 -1.7
1,726,962 - AO353_07830 0.78 -0.2
1,726,962 - AO353_07830 0.78 -1.6
1,726,962 - AO353_07830 0.78 -0.4
1,726,962 - AO353_07830 0.78 +0.1
1,727,031 + AO353_07830 0.88 -0.4
1,727,031 + AO353_07830 0.88 -1.3
1,727,110 + -1.6
1,727,110 + -2.0
1,727,192 + +0.9
1,727,193 - +0.8
1,727,193 - +1.0
1,727,193 - +1.0
1,727,193 - -1.6
1,727,332 + +1.6
1,727,332 + +0.6
1,727,332 + -0.2
1,727,332 + +0.7
1,727,332 + -0.8
1,727,333 - +0.6
1,727,333 - -0.2
1,727,333 - -0.4
1,727,353 + +0.2
1,727,353 + +0.2
1,727,353 + +0.1
1,727,353 + +1.7
1,727,354 - +1.3
1,727,354 - +0.3
1,727,354 - +0.7
1,727,354 - +0.6
1,727,354 - -1.2
1,727,446 + AO353_07835 0.13 +0.6
1,727,446 + AO353_07835 0.13 +0.3
1,727,581 + AO353_07835 0.22 +0.9
1,727,582 - AO353_07835 0.23 -1.1
1,727,582 - AO353_07835 0.23 -1.6
1,727,629 + AO353_07835 0.26 -0.1
1,727,629 + AO353_07835 0.26 +0.5
1,727,629 + AO353_07835 0.26 -1.3
1,727,629 + AO353_07835 0.26 -0.6
1,727,630 - AO353_07835 0.26 -0.3
1,727,725 + AO353_07835 0.32 +1.0
1,727,725 + AO353_07835 0.32 -1.9
1,727,725 + AO353_07835 0.32 -0.3
1,727,725 + AO353_07835 0.32 -0.3
1,727,726 - AO353_07835 0.33 +0.0
1,727,798 - AO353_07835 0.37 -0.1
1,728,058 + AO353_07835 0.56 +0.1
1,728,059 - AO353_07835 0.56 +2.2
1,728,059 - AO353_07835 0.56 +0.8
1,728,059 - AO353_07835 0.56 -0.2
1,728,059 - AO353_07835 0.56 +0.0

Or see this region's nucleotide sequence