Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_07820 and AO353_07825 overlap by 4 nucleotides AO353_07825 and AO353_07830 are separated by 230 nucleotides AO353_07830 and AO353_07835 are separated by 144 nucleotides
AO353_07820: AO353_07820 - branched-chain amino acid ABC transporter permease, at 1,725,114 to 1,725,839
_07820
AO353_07825: AO353_07825 - branched-chain amino acid ABC transporter, at 1,725,836 to 1,726,186
_07825
AO353_07830: AO353_07830 - dimethylmenaquinone methyltransferase, at 1,726,417 to 1,727,112
_07830
AO353_07835: AO353_07835 - peptidase C69, at 1,727,257 to 1,728,699
_07835
Position (kb)
1726
1727
1728 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1725.470 kb on + strand, within AO353_07820 at 1725.471 kb on - strand, within AO353_07820 at 1725.520 kb on - strand, within AO353_07820 at 1725.570 kb on + strand, within AO353_07820 at 1725.570 kb on + strand, within AO353_07820 at 1725.570 kb on + strand, within AO353_07820 at 1725.570 kb on + strand, within AO353_07820 at 1725.571 kb on - strand, within AO353_07820 at 1725.571 kb on - strand, within AO353_07820 at 1725.571 kb on - strand, within AO353_07820 at 1725.571 kb on - strand, within AO353_07820 at 1725.571 kb on - strand, within AO353_07820 at 1725.571 kb on - strand, within AO353_07820 at 1725.571 kb on - strand, within AO353_07820 at 1725.575 kb on - strand, within AO353_07820 at 1725.596 kb on + strand, within AO353_07820 at 1725.597 kb on - strand, within AO353_07820 at 1725.631 kb on + strand, within AO353_07820 at 1725.637 kb on + strand, within AO353_07820 at 1725.637 kb on + strand, within AO353_07820 at 1725.681 kb on + strand, within AO353_07820 at 1725.681 kb on + strand, within AO353_07820 at 1725.682 kb on - strand, within AO353_07820 at 1725.682 kb on - strand, within AO353_07820 at 1725.682 kb on - strand, within AO353_07820 at 1725.684 kb on + strand, within AO353_07820 at 1725.685 kb on - strand, within AO353_07820 at 1725.685 kb on - strand, within AO353_07820 at 1725.691 kb on + strand, within AO353_07820 at 1725.731 kb on + strand, within AO353_07820 at 1725.750 kb on + strand, within AO353_07820 at 1725.793 kb on + strand at 1725.793 kb on + strand at 1725.843 kb on + strand at 1725.844 kb on - strand at 1725.955 kb on + strand, within AO353_07825 at 1725.962 kb on + strand, within AO353_07825 at 1725.963 kb on - strand, within AO353_07825 at 1725.963 kb on - strand, within AO353_07825 at 1725.964 kb on + strand, within AO353_07825 at 1725.964 kb on + strand, within AO353_07825 at 1725.964 kb on + strand, within AO353_07825 at 1725.964 kb on + strand, within AO353_07825 at 1726.084 kb on + strand, within AO353_07825 at 1726.084 kb on + strand, within AO353_07825 at 1726.084 kb on + strand, within AO353_07825 at 1726.084 kb on + strand, within AO353_07825 at 1726.084 kb on + strand, within AO353_07825 at 1726.085 kb on - strand, within AO353_07825 at 1726.085 kb on - strand, within AO353_07825 at 1726.148 kb on + strand, within AO353_07825 at 1726.148 kb on + strand, within AO353_07825 at 1726.149 kb on - strand, within AO353_07825 at 1726.149 kb on - strand, within AO353_07825 at 1726.149 kb on - strand, within AO353_07825 at 1726.167 kb on - strand at 1726.167 kb on - strand at 1726.184 kb on + strand at 1726.184 kb on + strand at 1726.184 kb on + strand at 1726.185 kb on - strand at 1726.185 kb on - strand at 1726.221 kb on - strand at 1726.260 kb on + strand at 1726.260 kb on + strand at 1726.289 kb on - strand at 1726.338 kb on + strand at 1726.338 kb on + strand at 1726.338 kb on + strand at 1726.339 kb on - strand at 1726.339 kb on - strand at 1726.343 kb on + strand at 1726.343 kb on + strand at 1726.343 kb on + strand at 1726.343 kb on + strand at 1726.343 kb on + strand at 1726.343 kb on + strand at 1726.344 kb on - strand at 1726.344 kb on - strand at 1726.344 kb on - strand at 1726.344 kb on - strand at 1726.364 kb on - strand at 1726.364 kb on - strand at 1726.364 kb on - strand at 1726.364 kb on - strand at 1726.412 kb on + strand at 1726.412 kb on + strand at 1726.412 kb on + strand at 1726.412 kb on + strand at 1726.412 kb on + strand at 1726.412 kb on + strand at 1726.412 kb on + strand at 1726.413 kb on - strand at 1726.413 kb on - strand at 1726.413 kb on - strand at 1726.413 kb on - strand at 1726.413 kb on - strand at 1726.413 kb on - strand at 1726.413 kb on - strand at 1726.475 kb on + strand at 1726.475 kb on + strand at 1726.475 kb on + strand at 1726.475 kb on + strand at 1726.475 kb on + strand at 1726.475 kb on + strand at 1726.475 kb on + strand at 1726.475 kb on + strand at 1726.475 kb on + strand at 1726.475 kb on + strand at 1726.475 kb on + strand at 1726.475 kb on + strand at 1726.475 kb on + strand at 1726.475 kb on + strand at 1726.476 kb on - strand at 1726.476 kb on - strand at 1726.476 kb on - strand at 1726.476 kb on - strand at 1726.476 kb on - strand at 1726.476 kb on - strand at 1726.476 kb on - strand at 1726.476 kb on - strand at 1726.476 kb on - strand at 1726.476 kb on - strand at 1726.476 kb on - strand at 1726.476 kb on - strand at 1726.476 kb on - strand at 1726.476 kb on - strand at 1726.476 kb on - strand at 1726.476 kb on - strand at 1726.476 kb on - strand at 1726.476 kb on - strand at 1726.476 kb on - strand at 1726.476 kb on - strand at 1726.476 kb on - strand at 1726.476 kb on - strand at 1726.476 kb on - strand at 1726.834 kb on + strand, within AO353_07830 at 1726.835 kb on - strand, within AO353_07830 at 1726.850 kb on + strand, within AO353_07830 at 1726.850 kb on + strand, within AO353_07830 at 1726.850 kb on + strand, within AO353_07830 at 1726.851 kb on - strand, within AO353_07830 at 1726.892 kb on + strand, within AO353_07830 at 1726.893 kb on - strand, within AO353_07830 at 1726.961 kb on + strand, within AO353_07830 at 1726.961 kb on + strand, within AO353_07830 at 1726.961 kb on + strand, within AO353_07830 at 1726.962 kb on - strand, within AO353_07830 at 1726.962 kb on - strand, within AO353_07830 at 1726.962 kb on - strand, within AO353_07830 at 1726.962 kb on - strand, within AO353_07830 at 1727.031 kb on + strand, within AO353_07830 at 1727.031 kb on + strand, within AO353_07830 at 1727.110 kb on + strand at 1727.110 kb on + strand at 1727.192 kb on + strand at 1727.193 kb on - strand at 1727.193 kb on - strand at 1727.193 kb on - strand at 1727.193 kb on - strand at 1727.332 kb on + strand at 1727.332 kb on + strand at 1727.332 kb on + strand at 1727.332 kb on + strand at 1727.332 kb on + strand at 1727.333 kb on - strand at 1727.333 kb on - strand at 1727.333 kb on - strand at 1727.353 kb on + strand at 1727.353 kb on + strand at 1727.353 kb on + strand at 1727.353 kb on + strand at 1727.354 kb on - strand at 1727.354 kb on - strand at 1727.354 kb on - strand at 1727.354 kb on - strand at 1727.354 kb on - strand at 1727.446 kb on + strand, within AO353_07835 at 1727.446 kb on + strand, within AO353_07835 at 1727.581 kb on + strand, within AO353_07835 at 1727.582 kb on - strand, within AO353_07835 at 1727.582 kb on - strand, within AO353_07835 at 1727.629 kb on + strand, within AO353_07835 at 1727.629 kb on + strand, within AO353_07835 at 1727.629 kb on + strand, within AO353_07835 at 1727.629 kb on + strand, within AO353_07835 at 1727.630 kb on - strand, within AO353_07835 at 1727.725 kb on + strand, within AO353_07835 at 1727.725 kb on + strand, within AO353_07835 at 1727.725 kb on + strand, within AO353_07835 at 1727.725 kb on + strand, within AO353_07835 at 1727.726 kb on - strand, within AO353_07835 at 1727.798 kb on - strand, within AO353_07835 at 1728.058 kb on + strand, within AO353_07835 at 1728.059 kb on - strand, within AO353_07835 at 1728.059 kb on - strand, within AO353_07835 at 1728.059 kb on - strand, within AO353_07835 at 1728.059 kb on - strand, within AO353_07835
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 1,725,470 + AO353_07820 0.49 +0.5 1,725,471 - AO353_07820 0.49 +0.4 1,725,520 - AO353_07820 0.56 -0.8 1,725,570 + AO353_07820 0.63 -0.1 1,725,570 + AO353_07820 0.63 +0.9 1,725,570 + AO353_07820 0.63 +0.9 1,725,570 + AO353_07820 0.63 -0.9 1,725,571 - AO353_07820 0.63 +1.0 1,725,571 - AO353_07820 0.63 -0.1 1,725,571 - AO353_07820 0.63 +1.4 1,725,571 - AO353_07820 0.63 +0.9 1,725,571 - AO353_07820 0.63 -0.4 1,725,571 - AO353_07820 0.63 +0.2 1,725,571 - AO353_07820 0.63 -1.0 1,725,575 - AO353_07820 0.63 +1.5 1,725,596 + AO353_07820 0.66 -1.0 1,725,597 - AO353_07820 0.67 -0.6 1,725,631 + AO353_07820 0.71 +1.7 1,725,637 + AO353_07820 0.72 +1.5 1,725,637 + AO353_07820 0.72 -0.7 1,725,681 + AO353_07820 0.78 +0.3 1,725,681 + AO353_07820 0.78 +1.2 1,725,682 - AO353_07820 0.78 +0.7 1,725,682 - AO353_07820 0.78 -2.9 1,725,682 - AO353_07820 0.78 -0.2 1,725,684 + AO353_07820 0.79 +1.4 1,725,685 - AO353_07820 0.79 -2.4 1,725,685 - AO353_07820 0.79 +0.4 1,725,691 + AO353_07820 0.79 +0.2 1,725,731 + AO353_07820 0.85 -1.6 1,725,750 + AO353_07820 0.88 -0.7 1,725,793 + +0.1 1,725,793 + -0.9 1,725,843 + +0.6 1,725,844 - -1.9 1,725,955 + AO353_07825 0.34 +0.2 1,725,962 + AO353_07825 0.36 +0.1 1,725,963 - AO353_07825 0.36 +0.6 1,725,963 - AO353_07825 0.36 +0.2 1,725,964 + AO353_07825 0.36 +2.0 1,725,964 + AO353_07825 0.36 -0.7 1,725,964 + AO353_07825 0.36 +0.2 1,725,964 + AO353_07825 0.36 -0.9 1,726,084 + AO353_07825 0.71 -0.1 1,726,084 + AO353_07825 0.71 -0.6 1,726,084 + AO353_07825 0.71 +2.5 1,726,084 + AO353_07825 0.71 +0.2 1,726,084 + AO353_07825 0.71 -0.4 1,726,085 - AO353_07825 0.71 +0.2 1,726,085 - AO353_07825 0.71 +0.5 1,726,148 + AO353_07825 0.89 +0.5 1,726,148 + AO353_07825 0.89 -1.6 1,726,149 - AO353_07825 0.89 -0.9 1,726,149 - AO353_07825 0.89 +1.1 1,726,149 - AO353_07825 0.89 +0.1 1,726,167 - +1.0 1,726,167 - +1.1 1,726,184 + +0.1 1,726,184 + +0.4 1,726,184 + -1.1 1,726,185 - +1.0 1,726,185 - +3.8 1,726,221 - +1.0 1,726,260 + +0.6 1,726,260 + +0.2 1,726,289 - +1.0 1,726,338 + +0.2 1,726,338 + +2.4 1,726,338 + +1.1 1,726,339 - -0.1 1,726,339 - -0.9 1,726,343 + +0.4 1,726,343 + +0.7 1,726,343 + +0.7 1,726,343 + +1.2 1,726,343 + -0.9 1,726,343 + -0.1 1,726,344 - +0.6 1,726,344 - -1.1 1,726,344 - +1.0 1,726,344 - +0.1 1,726,364 - +0.7 1,726,364 - +1.4 1,726,364 - +1.7 1,726,364 - -0.6 1,726,412 + +1.0 1,726,412 + -0.5 1,726,412 + -0.4 1,726,412 + +0.2 1,726,412 + -0.3 1,726,412 + +0.6 1,726,412 + +1.2 1,726,413 - +0.2 1,726,413 - -0.5 1,726,413 - -2.2 1,726,413 - +0.8 1,726,413 - -1.0 1,726,413 - -0.7 1,726,413 - -0.9 1,726,475 + +0.4 1,726,475 + -0.2 1,726,475 + +0.5 1,726,475 + +0.4 1,726,475 + +1.5 1,726,475 + +0.2 1,726,475 + +0.8 1,726,475 + -1.6 1,726,475 + +0.2 1,726,475 + +0.7 1,726,475 + -0.7 1,726,475 + -0.2 1,726,475 + +0.4 1,726,475 + +1.6 1,726,476 - +0.8 1,726,476 - -0.5 1,726,476 - +0.1 1,726,476 - +0.9 1,726,476 - +2.0 1,726,476 - -0.4 1,726,476 - +0.9 1,726,476 - -1.4 1,726,476 - +0.6 1,726,476 - +1.6 1,726,476 - +2.3 1,726,476 - -0.3 1,726,476 - +0.2 1,726,476 - +0.1 1,726,476 - +0.6 1,726,476 - +0.4 1,726,476 - +0.1 1,726,476 - -0.1 1,726,476 - +0.1 1,726,476 - +1.4 1,726,476 - -0.9 1,726,476 - -1.2 1,726,476 - -1.5 1,726,834 + AO353_07830 0.60 +1.1 1,726,835 - AO353_07830 0.60 -0.9 1,726,850 + AO353_07830 0.62 -1.4 1,726,850 + AO353_07830 0.62 +0.5 1,726,850 + AO353_07830 0.62 +0.1 1,726,851 - AO353_07830 0.62 +0.3 1,726,892 + AO353_07830 0.68 -1.3 1,726,893 - AO353_07830 0.68 +0.2 1,726,961 + AO353_07830 0.78 -1.1 1,726,961 + AO353_07830 0.78 -1.5 1,726,961 + AO353_07830 0.78 -1.7 1,726,962 - AO353_07830 0.78 -0.2 1,726,962 - AO353_07830 0.78 -1.6 1,726,962 - AO353_07830 0.78 -0.4 1,726,962 - AO353_07830 0.78 +0.1 1,727,031 + AO353_07830 0.88 -0.4 1,727,031 + AO353_07830 0.88 -1.3 1,727,110 + -1.6 1,727,110 + -2.0 1,727,192 + +0.9 1,727,193 - +0.8 1,727,193 - +1.0 1,727,193 - +1.0 1,727,193 - -1.6 1,727,332 + +1.6 1,727,332 + +0.6 1,727,332 + -0.2 1,727,332 + +0.7 1,727,332 + -0.8 1,727,333 - +0.6 1,727,333 - -0.2 1,727,333 - -0.4 1,727,353 + +0.2 1,727,353 + +0.2 1,727,353 + +0.1 1,727,353 + +1.7 1,727,354 - +1.3 1,727,354 - +0.3 1,727,354 - +0.7 1,727,354 - +0.6 1,727,354 - -1.2 1,727,446 + AO353_07835 0.13 +0.6 1,727,446 + AO353_07835 0.13 +0.3 1,727,581 + AO353_07835 0.22 +0.9 1,727,582 - AO353_07835 0.23 -1.1 1,727,582 - AO353_07835 0.23 -1.6 1,727,629 + AO353_07835 0.26 -0.1 1,727,629 + AO353_07835 0.26 +0.5 1,727,629 + AO353_07835 0.26 -1.3 1,727,629 + AO353_07835 0.26 -0.6 1,727,630 - AO353_07835 0.26 -0.3 1,727,725 + AO353_07835 0.32 +1.0 1,727,725 + AO353_07835 0.32 -1.9 1,727,725 + AO353_07835 0.32 -0.3 1,727,725 + AO353_07835 0.32 -0.3 1,727,726 - AO353_07835 0.33 +0.0 1,727,798 - AO353_07835 0.37 -0.1 1,728,058 + AO353_07835 0.56 +0.1 1,728,059 - AO353_07835 0.56 +2.2 1,728,059 - AO353_07835 0.56 +0.8 1,728,059 - AO353_07835 0.56 -0.2 1,728,059 - AO353_07835 0.56 +0.0
Or see this region's nucleotide sequence