Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01610 and AO353_01615 are separated by 158 nucleotides AO353_01615 and AO353_01620 are separated by 432 nucleotides AO353_01620 and AO353_01625 are separated by 59 nucleotides AO353_01625 and AO353_01630 are separated by 2 nucleotides AO353_01630 and AO353_01635 are separated by 104 nucleotides AO353_01635 and AO353_01640 are separated by 2 nucleotides AO353_01640 and AO353_01645 are separated by 370 nucleotides
AO353_01610: AO353_01610 - pilus assembly protein PilA, at 342,429 to 342,626
_01610
AO353_01615: AO353_01615 - pilus assembly protein PilA, at 342,785 to 342,982
_01615
AO353_01620: AO353_01620 - AraC family transcriptional regulator, at 343,415 to 344,281
_01620
AO353_01625: AO353_01625 - tRNA-Gly, at 344,341 to 344,416
_01625
AO353_01630: AO353_01630 - tRNA-Glu, at 344,419 to 344,494
_01630
AO353_01635: AO353_01635 - tRNA-Gly, at 344,599 to 344,674
_01635
AO353_01640: AO353_01640 - tRNA-Glu, at 344,677 to 344,752
_01640
AO353_01645: AO353_01645 - hypothetical protein, at 345,123 to 345,881
_01645
Position (kb) 343
344
345 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 342.424 kb on + strand at 342.424 kb on + strand at 342.424 kb on + strand at 342.424 kb on + strand at 342.424 kb on + strand at 342.425 kb on - strand at 342.425 kb on - strand at 342.425 kb on - strand at 342.666 kb on + strand at 342.666 kb on + strand at 342.666 kb on + strand at 342.666 kb on + strand at 342.666 kb on + strand at 342.666 kb on + strand at 342.666 kb on + strand at 342.666 kb on + strand at 342.666 kb on + strand at 342.666 kb on + strand at 342.666 kb on + strand at 342.666 kb on + strand at 342.666 kb on + strand at 342.666 kb on + strand at 342.666 kb on + strand at 342.667 kb on - strand at 342.667 kb on - strand at 342.667 kb on - strand at 342.667 kb on - strand at 342.667 kb on - strand at 342.667 kb on - strand at 342.667 kb on - strand at 342.667 kb on - strand at 342.675 kb on - strand at 342.696 kb on - strand at 342.799 kb on + strand at 342.886 kb on + strand, within AO353_01615 at 342.886 kb on + strand, within AO353_01615 at 342.886 kb on + strand, within AO353_01615 at 342.909 kb on + strand, within AO353_01615 at 342.909 kb on + strand, within AO353_01615 at 342.910 kb on - strand, within AO353_01615 at 342.910 kb on - strand, within AO353_01615 at 342.910 kb on - strand, within AO353_01615 at 342.910 kb on - strand, within AO353_01615 at 342.967 kb on + strand at 342.967 kb on + strand at 342.967 kb on + strand at 342.967 kb on + strand at 342.967 kb on + strand at 342.967 kb on + strand at 342.967 kb on + strand at 342.967 kb on + strand at 342.968 kb on - strand at 342.968 kb on - strand at 342.968 kb on - strand at 343.041 kb on + strand at 343.041 kb on + strand at 343.041 kb on + strand at 343.041 kb on + strand at 343.041 kb on + strand at 343.041 kb on + strand at 343.041 kb on + strand at 343.042 kb on - strand at 343.042 kb on - strand at 343.042 kb on - strand at 343.042 kb on - strand at 343.042 kb on - strand at 343.045 kb on + strand at 343.045 kb on + strand at 343.045 kb on + strand at 343.046 kb on - strand at 343.046 kb on - strand at 343.046 kb on - strand at 343.046 kb on - strand at 343.050 kb on + strand at 343.050 kb on + strand at 343.050 kb on + strand at 343.050 kb on + strand at 343.050 kb on + strand at 343.050 kb on + strand at 343.051 kb on - strand at 343.074 kb on + strand at 343.075 kb on - strand at 343.173 kb on - strand at 343.173 kb on - strand at 343.173 kb on - strand at 343.257 kb on + strand at 343.258 kb on - strand at 343.258 kb on - strand at 343.258 kb on - strand at 343.261 kb on + strand at 343.262 kb on - strand at 343.294 kb on - strand at 343.294 kb on - strand at 343.302 kb on + strand at 343.303 kb on - strand at 343.303 kb on - strand at 343.303 kb on - strand at 343.303 kb on - strand at 343.334 kb on + strand at 343.335 kb on - strand at 343.363 kb on + strand at 343.363 kb on + strand at 343.363 kb on + strand at 343.363 kb on + strand at 343.363 kb on + strand at 343.363 kb on + strand at 343.363 kb on + strand at 343.363 kb on + strand at 343.363 kb on + strand at 343.363 kb on + strand at 343.363 kb on + strand at 343.364 kb on - strand at 343.364 kb on - strand at 343.364 kb on - strand at 343.364 kb on - strand at 343.364 kb on - strand at 343.364 kb on - strand at 343.366 kb on + strand at 343.366 kb on + strand at 343.366 kb on + strand at 343.366 kb on + strand at 343.367 kb on - strand at 343.367 kb on - strand at 343.367 kb on - strand at 343.367 kb on - strand at 343.367 kb on - strand at 343.367 kb on - strand at 343.408 kb on + strand at 343.408 kb on + strand at 343.408 kb on + strand at 343.408 kb on + strand at 343.408 kb on + strand at 343.408 kb on + strand at 343.408 kb on + strand at 343.408 kb on + strand at 343.409 kb on - strand at 343.409 kb on - strand at 343.409 kb on - strand at 343.409 kb on - strand at 343.409 kb on - strand at 343.409 kb on - strand at 343.446 kb on + strand at 343.446 kb on + strand at 343.446 kb on + strand at 343.447 kb on - strand at 343.447 kb on - strand at 343.447 kb on - strand at 343.447 kb on - strand at 343.447 kb on - strand at 343.718 kb on + strand, within AO353_01620 at 343.718 kb on + strand, within AO353_01620 at 343.718 kb on + strand, within AO353_01620 at 343.718 kb on + strand, within AO353_01620 at 343.718 kb on + strand, within AO353_01620 at 343.719 kb on - strand, within AO353_01620 at 343.719 kb on - strand, within AO353_01620 at 343.719 kb on - strand, within AO353_01620 at 343.719 kb on - strand, within AO353_01620 at 343.719 kb on - strand, within AO353_01620 at 343.719 kb on - strand, within AO353_01620 at 343.719 kb on - strand, within AO353_01620 at 343.719 kb on - strand, within AO353_01620 at 343.719 kb on - strand, within AO353_01620 at 343.789 kb on - strand, within AO353_01620 at 343.789 kb on - strand, within AO353_01620 at 343.910 kb on + strand, within AO353_01620 at 343.910 kb on + strand, within AO353_01620 at 343.910 kb on + strand, within AO353_01620 at 343.911 kb on - strand, within AO353_01620 at 343.911 kb on - strand, within AO353_01620 at 344.030 kb on + strand, within AO353_01620 at 344.030 kb on + strand, within AO353_01620 at 344.030 kb on + strand, within AO353_01620 at 344.030 kb on + strand, within AO353_01620 at 344.030 kb on + strand, within AO353_01620 at 344.030 kb on + strand, within AO353_01620 at 344.031 kb on - strand, within AO353_01620 at 344.031 kb on - strand, within AO353_01620 at 344.031 kb on - strand, within AO353_01620 at 344.031 kb on - strand, within AO353_01620 at 344.132 kb on + strand, within AO353_01620 at 344.132 kb on + strand, within AO353_01620 at 344.132 kb on + strand, within AO353_01620 at 344.133 kb on - strand, within AO353_01620 at 344.204 kb on - strand at 344.204 kb on - strand at 344.254 kb on + strand at 344.284 kb on + strand at 344.285 kb on - strand at 344.285 kb on - strand at 344.290 kb on + strand at 344.290 kb on + strand at 344.290 kb on + strand at 344.290 kb on + strand at 344.290 kb on + strand at 344.291 kb on - strand at 344.340 kb on - strand at 344.340 kb on - strand at 344.340 kb on - strand at 344.759 kb on - strand at 344.759 kb on - strand at 344.759 kb on - strand at 344.759 kb on - strand at 344.759 kb on - strand at 344.759 kb on - strand at 344.759 kb on - strand at 344.759 kb on - strand at 344.759 kb on - strand at 344.759 kb on - strand at 344.759 kb on - strand at 344.759 kb on - strand at 344.804 kb on - strand at 344.820 kb on - strand at 344.820 kb on - strand at 344.852 kb on + strand at 344.860 kb on + strand at 344.931 kb on + strand at 344.931 kb on + strand at 344.931 kb on + strand at 344.931 kb on + strand at 344.931 kb on + strand at 344.931 kb on + strand at 344.931 kb on + strand at 344.931 kb on + strand at 344.932 kb on - strand at 344.932 kb on - strand at 344.932 kb on - strand at 344.932 kb on - strand at 344.932 kb on - strand at 344.933 kb on + strand at 344.933 kb on + strand at 344.933 kb on + strand at 344.934 kb on - strand at 344.934 kb on - strand at 344.934 kb on - strand at 344.934 kb on - strand at 344.934 kb on - strand at 344.956 kb on + strand at 344.957 kb on - strand at 344.957 kb on - strand at 344.957 kb on - strand at 344.958 kb on + strand at 344.958 kb on + strand at 344.958 kb on + strand at 344.958 kb on + strand at 344.958 kb on + strand at 344.958 kb on + strand at 344.958 kb on + strand at 344.959 kb on - strand at 344.959 kb on - strand at 345.007 kb on + strand at 345.007 kb on + strand at 345.007 kb on + strand at 345.007 kb on + strand at 345.007 kb on + strand at 345.007 kb on + strand at 345.007 kb on + strand at 345.007 kb on + strand at 345.007 kb on + strand at 345.008 kb on - strand at 345.008 kb on - strand at 345.008 kb on - strand at 345.008 kb on - strand at 345.008 kb on - strand at 345.008 kb on - strand at 345.008 kb on - strand at 345.008 kb on - strand at 345.008 kb on - strand at 345.008 kb on - strand at 345.008 kb on - strand at 345.008 kb on - strand at 345.009 kb on + strand at 345.010 kb on - strand at 345.010 kb on - strand at 345.010 kb on - strand at 345.010 kb on - strand at 345.010 kb on - strand at 345.010 kb on - strand at 345.011 kb on + strand at 345.011 kb on + strand at 345.011 kb on + strand at 345.011 kb on + strand at 345.011 kb on + strand at 345.011 kb on + strand at 345.011 kb on + strand at 345.011 kb on + strand at 345.011 kb on + strand at 345.012 kb on - strand at 345.012 kb on - strand at 345.012 kb on - strand at 345.012 kb on - strand at 345.012 kb on - strand at 345.012 kb on - strand at 345.012 kb on - strand at 345.012 kb on - strand at 345.012 kb on - strand at 345.012 kb on - strand at 345.012 kb on - strand at 345.051 kb on + strand at 345.052 kb on - strand at 345.052 kb on - strand at 345.068 kb on - strand at 345.068 kb on - strand at 345.074 kb on + strand at 345.074 kb on + strand at 345.074 kb on + strand at 345.075 kb on - strand at 345.075 kb on - strand at 345.075 kb on - strand at 345.093 kb on + strand at 345.094 kb on - strand at 345.094 kb on - strand at 345.094 kb on - strand at 345.094 kb on - strand at 345.095 kb on + strand at 345.096 kb on - strand at 345.136 kb on + strand at 345.136 kb on + strand at 345.136 kb on + strand at 345.136 kb on + strand at 345.136 kb on + strand at 345.136 kb on + strand at 345.136 kb on + strand at 345.136 kb on + strand at 345.136 kb on + strand at 345.137 kb on - strand at 345.137 kb on - strand at 345.137 kb on - strand at 345.137 kb on - strand at 345.137 kb on - strand at 345.137 kb on - strand at 345.139 kb on + strand at 345.139 kb on + strand at 345.139 kb on + strand at 345.139 kb on + strand at 345.139 kb on + strand at 345.139 kb on + strand at 345.139 kb on + strand at 345.139 kb on + strand at 345.140 kb on - strand at 345.140 kb on - strand at 345.140 kb on - strand at 345.140 kb on - strand at 345.142 kb on + strand at 345.142 kb on + strand at 345.143 kb on - strand at 345.143 kb on - strand at 345.157 kb on + strand at 345.157 kb on + strand at 345.158 kb on - strand at 345.174 kb on + strand at 345.174 kb on + strand at 345.174 kb on + strand at 345.175 kb on - strand at 345.200 kb on + strand, within AO353_01645 at 345.200 kb on + strand, within AO353_01645 at 345.201 kb on - strand, within AO353_01645
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 342,424 + -1.5 342,424 + -0.4 342,424 + +2.1 342,424 + -0.9 342,424 + +0.3 342,425 - +0.7 342,425 - -0.3 342,425 - +0.9 342,666 + +1.0 342,666 + +0.4 342,666 + +1.9 342,666 + +0.5 342,666 + +1.1 342,666 + +0.8 342,666 + -0.5 342,666 + -1.5 342,666 + -0.2 342,666 + +0.9 342,666 + -0.3 342,666 + -2.0 342,666 + +0.7 342,666 + +2.2 342,666 + +0.5 342,667 - +1.2 342,667 - +0.7 342,667 - -1.7 342,667 - +0.6 342,667 - +0.3 342,667 - -0.2 342,667 - +0.8 342,667 - -1.6 342,675 - -1.0 342,696 - +0.2 342,799 + +1.0 342,886 + AO353_01615 0.51 -0.1 342,886 + AO353_01615 0.51 -0.4 342,886 + AO353_01615 0.51 +0.4 342,909 + AO353_01615 0.63 -1.3 342,909 + AO353_01615 0.63 +1.4 342,910 - AO353_01615 0.63 +0.7 342,910 - AO353_01615 0.63 -0.8 342,910 - AO353_01615 0.63 -0.6 342,910 - AO353_01615 0.63 -1.1 342,967 + -1.5 342,967 + +0.8 342,967 + +1.9 342,967 + +1.1 342,967 + +0.9 342,967 + -0.8 342,967 + +1.1 342,967 + +0.3 342,968 - -0.5 342,968 - +0.3 342,968 - -0.0 343,041 + -0.5 343,041 + +1.6 343,041 + -0.1 343,041 + +1.2 343,041 + -0.1 343,041 + -0.5 343,041 + +1.7 343,042 - -0.4 343,042 - +0.9 343,042 - -0.1 343,042 - -0.8 343,042 - +0.4 343,045 + -0.6 343,045 + -0.1 343,045 + -0.3 343,046 - -0.1 343,046 - +0.0 343,046 - -0.3 343,046 - +0.9 343,050 + -0.6 343,050 + +0.7 343,050 + -0.8 343,050 + -0.1 343,050 + -1.9 343,050 + +1.6 343,051 - -1.7 343,074 + +1.9 343,075 - -0.3 343,173 - -0.4 343,173 - -0.3 343,173 - +0.5 343,257 + -1.5 343,258 - -0.5 343,258 - +1.2 343,258 - +1.3 343,261 + +0.8 343,262 - -1.2 343,294 - -1.3 343,294 - +1.2 343,302 + -0.0 343,303 - -0.3 343,303 - -0.1 343,303 - -1.4 343,303 - +0.6 343,334 + -2.6 343,335 - +0.3 343,363 + +0.2 343,363 + +0.6 343,363 + -0.3 343,363 + -0.6 343,363 + -1.4 343,363 + -0.6 343,363 + +1.3 343,363 + -0.4 343,363 + -0.0 343,363 + +2.9 343,363 + -2.3 343,364 - +0.3 343,364 - -1.0 343,364 - -0.7 343,364 - +0.3 343,364 - +1.4 343,364 - -0.3 343,366 + -1.5 343,366 + -0.3 343,366 + -1.0 343,366 + -1.7 343,367 - +0.0 343,367 - -1.1 343,367 - +0.7 343,367 - +2.2 343,367 - -0.7 343,367 - -1.7 343,408 + +2.1 343,408 + +1.3 343,408 + -0.2 343,408 + +0.2 343,408 + +0.2 343,408 + +0.6 343,408 + -0.2 343,408 + +0.7 343,409 - -0.3 343,409 - -1.3 343,409 - -0.7 343,409 - +0.2 343,409 - -0.1 343,409 - +1.3 343,446 + +0.6 343,446 + +0.4 343,446 + -0.4 343,447 - -3.0 343,447 - -0.3 343,447 - -1.7 343,447 - +1.5 343,447 - -0.5 343,718 + AO353_01620 0.35 -0.6 343,718 + AO353_01620 0.35 +0.3 343,718 + AO353_01620 0.35 -0.3 343,718 + AO353_01620 0.35 +0.0 343,718 + AO353_01620 0.35 -2.1 343,719 - AO353_01620 0.35 -2.3 343,719 - AO353_01620 0.35 -0.3 343,719 - AO353_01620 0.35 +0.1 343,719 - AO353_01620 0.35 -0.5 343,719 - AO353_01620 0.35 -0.5 343,719 - AO353_01620 0.35 +0.4 343,719 - AO353_01620 0.35 +0.1 343,719 - AO353_01620 0.35 +0.6 343,719 - AO353_01620 0.35 +0.2 343,789 - AO353_01620 0.43 -0.3 343,789 - AO353_01620 0.43 +0.0 343,910 + AO353_01620 0.57 -0.8 343,910 + AO353_01620 0.57 -0.4 343,910 + AO353_01620 0.57 +0.3 343,911 - AO353_01620 0.57 +0.3 343,911 - AO353_01620 0.57 +0.6 344,030 + AO353_01620 0.71 -0.3 344,030 + AO353_01620 0.71 -0.4 344,030 + AO353_01620 0.71 -0.8 344,030 + AO353_01620 0.71 -0.1 344,030 + AO353_01620 0.71 +1.3 344,030 + AO353_01620 0.71 -1.4 344,031 - AO353_01620 0.71 -1.4 344,031 - AO353_01620 0.71 -0.8 344,031 - AO353_01620 0.71 -1.3 344,031 - AO353_01620 0.71 -0.7 344,132 + AO353_01620 0.83 -0.7 344,132 + AO353_01620 0.83 -1.1 344,132 + AO353_01620 0.83 -0.8 344,133 - AO353_01620 0.83 -1.9 344,204 - +1.4 344,204 - +0.1 344,254 + +1.2 344,284 + +0.4 344,285 - +1.8 344,285 - -1.3 344,290 + +0.2 344,290 + +0.2 344,290 + -0.1 344,290 + -0.4 344,290 + -0.5 344,291 - -1.8 344,340 - -1.1 344,340 - +0.3 344,340 - -1.5 344,759 - -0.5 344,759 - -0.5 344,759 - -0.4 344,759 - -0.9 344,759 - +0.7 344,759 - -1.7 344,759 - -0.5 344,759 - -0.1 344,759 - -1.2 344,759 - +1.0 344,759 - +0.2 344,759 - +0.7 344,804 - +0.2 344,820 - +0.5 344,820 - -0.3 344,852 + -0.5 344,860 + +0.2 344,931 + -0.5 344,931 + +1.2 344,931 + -0.3 344,931 + -0.5 344,931 + -0.1 344,931 + -2.0 344,931 + -0.7 344,931 + -0.7 344,932 - -0.2 344,932 - +0.0 344,932 - -0.2 344,932 - -0.3 344,932 - -0.9 344,933 + -2.3 344,933 + +0.3 344,933 + -0.1 344,934 - +0.3 344,934 - +0.6 344,934 - -0.6 344,934 - +0.5 344,934 - -0.7 344,956 + -0.2 344,957 - -0.0 344,957 - -0.8 344,957 - -0.9 344,958 + -0.0 344,958 + +0.5 344,958 + -0.1 344,958 + +1.0 344,958 + -0.2 344,958 + -0.5 344,958 + +0.2 344,959 - -0.7 344,959 - -0.7 345,007 + -0.5 345,007 + +1.5 345,007 + -1.3 345,007 + -0.7 345,007 + +0.1 345,007 + +0.2 345,007 + +0.0 345,007 + +0.2 345,007 + -0.2 345,008 - -0.1 345,008 - +0.5 345,008 - -0.1 345,008 - -1.1 345,008 - +0.0 345,008 - +0.7 345,008 - +0.3 345,008 - -0.7 345,008 - +1.5 345,008 - +1.8 345,008 - +0.9 345,008 - +0.6 345,009 + -1.3 345,010 - +0.9 345,010 - +1.1 345,010 - +0.6 345,010 - -1.5 345,010 - +0.9 345,010 - -3.2 345,011 + -0.3 345,011 + +1.0 345,011 + +1.3 345,011 + -0.6 345,011 + +0.4 345,011 + -1.9 345,011 + -0.1 345,011 + -2.1 345,011 + +1.7 345,012 - +2.8 345,012 - +0.9 345,012 - -2.0 345,012 - +1.2 345,012 - -0.1 345,012 - +1.3 345,012 - -1.5 345,012 - -0.5 345,012 - +2.7 345,012 - -0.3 345,012 - +0.3 345,051 + +0.4 345,052 - -1.7 345,052 - +0.6 345,068 - -0.2 345,068 - +0.9 345,074 + +0.6 345,074 + +1.6 345,074 + +0.0 345,075 - +1.5 345,075 - +0.7 345,075 - +0.2 345,093 + +0.6 345,094 - -2.0 345,094 - -0.7 345,094 - +1.2 345,094 - -1.5 345,095 + -0.6 345,096 - +0.6 345,136 + +0.4 345,136 + -0.2 345,136 + +1.1 345,136 + +0.0 345,136 + -0.3 345,136 + -0.6 345,136 + -1.5 345,136 + -2.6 345,136 + +1.5 345,137 - -0.4 345,137 - -0.6 345,137 - +0.8 345,137 - +0.7 345,137 - +0.1 345,137 - +1.5 345,139 + -0.1 345,139 + -1.3 345,139 + +0.8 345,139 + -0.4 345,139 + -1.8 345,139 + +0.9 345,139 + +0.7 345,139 + +0.5 345,140 - -1.7 345,140 - +1.5 345,140 - -1.0 345,140 - +0.4 345,142 + -0.0 345,142 + -1.3 345,143 - -0.5 345,143 - -0.8 345,157 + -1.5 345,157 + -1.2 345,158 - -1.4 345,174 + +1.1 345,174 + +0.5 345,174 + +2.4 345,175 - +0.3 345,200 + AO353_01645 0.10 +0.1 345,200 + AO353_01645 0.10 -0.6 345,201 - AO353_01645 0.10 -1.8
Or see this region's nucleotide sequence