Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_000585

Experiment: Plant outgrowth control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_000583 and ABIE53_000584 are separated by 208 nucleotidesABIE53_000584 and ABIE53_000585 are separated by 71 nucleotidesABIE53_000585 and ABIE53_000586 are separated by 11 nucleotides ABIE53_000583: ABIE53_000583 - hypothetical protein, at 638,424 to 640,250 _000583 ABIE53_000584: ABIE53_000584 - hypothetical protein, at 640,459 to 640,725 _000584 ABIE53_000585: ABIE53_000585 - hemolysin activation/secretion protein, at 640,797 to 642,551 _000585 ABIE53_000586: ABIE53_000586 - dienelactone hydrolase, at 642,563 to 643,879 _000586 Position (kb) 640 641 642 643Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 639.801 kb on + strand, within ABIE53_000583at 639.802 kb on - strand, within ABIE53_000583at 639.802 kb on - strand, within ABIE53_000583at 639.802 kb on - strand, within ABIE53_000583at 639.802 kb on - strand, within ABIE53_000583at 639.802 kb on - strand, within ABIE53_000583at 639.809 kb on + strand, within ABIE53_000583at 639.810 kb on - strand, within ABIE53_000583at 639.811 kb on + strand, within ABIE53_000583at 639.811 kb on + strand, within ABIE53_000583at 639.811 kb on + strand, within ABIE53_000583at 639.811 kb on + strand, within ABIE53_000583at 639.811 kb on + strand, within ABIE53_000583at 639.811 kb on + strand, within ABIE53_000583at 639.812 kb on - strand, within ABIE53_000583at 639.959 kb on - strand, within ABIE53_000583at 639.959 kb on - strand, within ABIE53_000583at 639.959 kb on - strand, within ABIE53_000583at 640.223 kb on + strandat 640.286 kb on + strandat 640.294 kb on + strandat 640.294 kb on + strandat 640.294 kb on + strandat 640.303 kb on + strandat 640.303 kb on + strandat 640.303 kb on + strandat 640.303 kb on + strandat 640.303 kb on + strandat 640.303 kb on + strandat 640.304 kb on - strandat 640.304 kb on - strandat 640.304 kb on - strandat 640.309 kb on + strandat 640.323 kb on - strandat 640.323 kb on - strandat 640.345 kb on - strandat 640.388 kb on - strandat 640.400 kb on - strandat 640.419 kb on + strandat 640.419 kb on + strandat 640.419 kb on + strandat 640.419 kb on + strandat 640.420 kb on - strandat 640.490 kb on + strand, within ABIE53_000584at 640.490 kb on + strand, within ABIE53_000584at 640.490 kb on + strand, within ABIE53_000584at 640.491 kb on - strand, within ABIE53_000584at 640.491 kb on - strand, within ABIE53_000584at 640.530 kb on - strand, within ABIE53_000584at 640.530 kb on - strand, within ABIE53_000584at 640.592 kb on + strand, within ABIE53_000584at 640.593 kb on - strand, within ABIE53_000584at 640.593 kb on - strand, within ABIE53_000584at 640.650 kb on + strand, within ABIE53_000584at 640.693 kb on + strand, within ABIE53_000584at 640.693 kb on + strand, within ABIE53_000584at 640.694 kb on - strand, within ABIE53_000584at 640.694 kb on - strand, within ABIE53_000584at 640.723 kb on + strandat 640.772 kb on + strandat 640.772 kb on + strandat 640.773 kb on - strandat 640.812 kb on - strandat 640.812 kb on - strandat 640.812 kb on - strandat 640.843 kb on + strandat 640.844 kb on - strandat 640.844 kb on - strandat 641.095 kb on + strand, within ABIE53_000585at 641.096 kb on - strand, within ABIE53_000585at 641.096 kb on - strand, within ABIE53_000585at 641.096 kb on - strand, within ABIE53_000585at 641.263 kb on + strand, within ABIE53_000585at 641.263 kb on + strand, within ABIE53_000585at 641.263 kb on + strand, within ABIE53_000585at 641.263 kb on + strand, within ABIE53_000585at 641.462 kb on + strand, within ABIE53_000585at 641.462 kb on + strand, within ABIE53_000585at 641.467 kb on - strand, within ABIE53_000585at 641.509 kb on + strand, within ABIE53_000585at 641.509 kb on + strand, within ABIE53_000585at 641.510 kb on - strand, within ABIE53_000585at 641.510 kb on - strand, within ABIE53_000585at 641.584 kb on + strand, within ABIE53_000585at 641.584 kb on + strand, within ABIE53_000585at 641.584 kb on + strand, within ABIE53_000585at 641.584 kb on + strand, within ABIE53_000585at 641.585 kb on - strand, within ABIE53_000585at 641.597 kb on + strand, within ABIE53_000585at 641.597 kb on + strand, within ABIE53_000585at 641.597 kb on + strand, within ABIE53_000585at 641.727 kb on + strand, within ABIE53_000585at 641.763 kb on + strand, within ABIE53_000585at 641.763 kb on + strand, within ABIE53_000585at 641.763 kb on + strand, within ABIE53_000585at 641.763 kb on + strand, within ABIE53_000585at 641.763 kb on + strand, within ABIE53_000585at 641.763 kb on + strand, within ABIE53_000585at 641.764 kb on - strand, within ABIE53_000585at 641.764 kb on - strand, within ABIE53_000585at 641.764 kb on - strand, within ABIE53_000585at 641.764 kb on - strand, within ABIE53_000585at 641.764 kb on - strand, within ABIE53_000585at 641.764 kb on - strand, within ABIE53_000585at 641.764 kb on - strand, within ABIE53_000585at 641.988 kb on + strand, within ABIE53_000585at 641.988 kb on + strand, within ABIE53_000585at 641.989 kb on - strand, within ABIE53_000585at 641.989 kb on - strand, within ABIE53_000585at 642.085 kb on - strand, within ABIE53_000585at 642.201 kb on + strand, within ABIE53_000585at 642.201 kb on + strand, within ABIE53_000585at 642.202 kb on - strand, within ABIE53_000585at 642.205 kb on + strand, within ABIE53_000585at 642.206 kb on - strand, within ABIE53_000585at 642.285 kb on + strand, within ABIE53_000585at 642.286 kb on - strand, within ABIE53_000585at 642.286 kb on - strand, within ABIE53_000585at 642.301 kb on + strand, within ABIE53_000585at 642.301 kb on + strand, within ABIE53_000585at 642.301 kb on + strand, within ABIE53_000585at 642.302 kb on - strand, within ABIE53_000585at 642.302 kb on - strand, within ABIE53_000585at 642.302 kb on - strand, within ABIE53_000585at 642.302 kb on - strand, within ABIE53_000585at 642.302 kb on - strand, within ABIE53_000585at 642.302 kb on - strand, within ABIE53_000585at 642.302 kb on - strand, within ABIE53_000585at 642.336 kb on + strand, within ABIE53_000585at 642.336 kb on + strand, within ABIE53_000585at 642.336 kb on + strand, within ABIE53_000585at 642.337 kb on - strand, within ABIE53_000585at 642.337 kb on - strand, within ABIE53_000585at 642.352 kb on - strand, within ABIE53_000585at 642.352 kb on - strand, within ABIE53_000585at 642.361 kb on + strand, within ABIE53_000585at 642.362 kb on - strand, within ABIE53_000585at 642.422 kb on - strandat 642.459 kb on + strandat 642.549 kb on + strandat 642.574 kb on + strandat 642.575 kb on - strandat 642.580 kb on + strandat 642.652 kb on + strandat 642.653 kb on - strandat 642.705 kb on + strand, within ABIE53_000586at 642.705 kb on + strand, within ABIE53_000586at 642.705 kb on + strand, within ABIE53_000586at 642.706 kb on - strand, within ABIE53_000586at 642.706 kb on - strand, within ABIE53_000586at 642.706 kb on - strand, within ABIE53_000586at 642.876 kb on + strand, within ABIE53_000586at 642.877 kb on - strand, within ABIE53_000586at 642.948 kb on + strand, within ABIE53_000586at 642.948 kb on + strand, within ABIE53_000586at 642.948 kb on + strand, within ABIE53_000586at 643.055 kb on - strand, within ABIE53_000586at 643.055 kb on - strand, within ABIE53_000586at 643.055 kb on - strand, within ABIE53_000586at 643.055 kb on - strand, within ABIE53_000586at 643.056 kb on + strand, within ABIE53_000586at 643.056 kb on + strand, within ABIE53_000586at 643.056 kb on + strand, within ABIE53_000586at 643.056 kb on + strand, within ABIE53_000586at 643.056 kb on + strand, within ABIE53_000586at 643.056 kb on + strand, within ABIE53_000586at 643.057 kb on - strand, within ABIE53_000586at 643.057 kb on - strand, within ABIE53_000586at 643.057 kb on - strand, within ABIE53_000586at 643.057 kb on - strand, within ABIE53_000586at 643.057 kb on - strand, within ABIE53_000586at 643.057 kb on - strand, within ABIE53_000586at 643.057 kb on - strand, within ABIE53_000586at 643.057 kb on - strand, within ABIE53_000586at 643.057 kb on - strand, within ABIE53_000586at 643.101 kb on + strand, within ABIE53_000586at 643.158 kb on + strand, within ABIE53_000586at 643.158 kb on + strand, within ABIE53_000586at 643.158 kb on + strand, within ABIE53_000586at 643.158 kb on + strand, within ABIE53_000586at 643.194 kb on + strand, within ABIE53_000586at 643.305 kb on + strand, within ABIE53_000586at 643.351 kb on + strand, within ABIE53_000586at 643.352 kb on - strand, within ABIE53_000586at 643.368 kb on + strand, within ABIE53_000586at 643.369 kb on - strand, within ABIE53_000586at 643.369 kb on - strand, within ABIE53_000586at 643.369 kb on - strand, within ABIE53_000586at 643.386 kb on + strand, within ABIE53_000586at 643.386 kb on + strand, within ABIE53_000586at 643.386 kb on + strand, within ABIE53_000586at 643.386 kb on + strand, within ABIE53_000586at 643.386 kb on + strand, within ABIE53_000586at 643.386 kb on + strand, within ABIE53_000586at 643.387 kb on - strand, within ABIE53_000586at 643.387 kb on - strand, within ABIE53_000586at 643.387 kb on - strand, within ABIE53_000586at 643.387 kb on - strand, within ABIE53_000586at 643.459 kb on - strand, within ABIE53_000586at 643.459 kb on - strand, within ABIE53_000586at 643.459 kb on - strand, within ABIE53_000586

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant outgrowth control
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639,801 + ABIE53_000583 0.75 +0.1
639,802 - ABIE53_000583 0.75 -1.1
639,802 - ABIE53_000583 0.75 -3.2
639,802 - ABIE53_000583 0.75 +0.3
639,802 - ABIE53_000583 0.75 +0.7
639,802 - ABIE53_000583 0.75 -0.6
639,809 + ABIE53_000583 0.76 -2.6
639,810 - ABIE53_000583 0.76 -1.1
639,811 + ABIE53_000583 0.76 +2.0
639,811 + ABIE53_000583 0.76 +0.6
639,811 + ABIE53_000583 0.76 -1.5
639,811 + ABIE53_000583 0.76 -1.6
639,811 + ABIE53_000583 0.76 +0.0
639,811 + ABIE53_000583 0.76 -0.8
639,812 - ABIE53_000583 0.76 -1.2
639,959 - ABIE53_000583 0.84 -0.3
639,959 - ABIE53_000583 0.84 +0.3
639,959 - ABIE53_000583 0.84 -0.4
640,223 + +0.0
640,286 + -0.6
640,294 + -1.6
640,294 + -0.6
640,294 + -1.0
640,303 + +0.0
640,303 + -1.5
640,303 + +2.3
640,303 + -0.6
640,303 + +0.2
640,303 + -2.1
640,304 - +2.0
640,304 - +1.3
640,304 - +0.2
640,309 + -2.7
640,323 - -3.4
640,323 - -1.0
640,345 - -0.6
640,388 - -2.7
640,400 - -1.0
640,419 + +1.0
640,419 + -0.7
640,419 + +0.5
640,419 + +1.4
640,420 - -2.2
640,490 + ABIE53_000584 0.12 -0.9
640,490 + ABIE53_000584 0.12 -1.1
640,490 + ABIE53_000584 0.12 -2.0
640,491 - ABIE53_000584 0.12 +1.0
640,491 - ABIE53_000584 0.12 -2.7
640,530 - ABIE53_000584 0.27 -0.7
640,530 - ABIE53_000584 0.27 -0.5
640,592 + ABIE53_000584 0.50 +0.0
640,593 - ABIE53_000584 0.50 -0.6
640,593 - ABIE53_000584 0.50 -1.0
640,650 + ABIE53_000584 0.72 +0.3
640,693 + ABIE53_000584 0.88 +1.8
640,693 + ABIE53_000584 0.88 -1.1
640,694 - ABIE53_000584 0.88 -0.6
640,694 - ABIE53_000584 0.88 -1.7
640,723 + -0.6
640,772 + -1.1
640,772 + -1.4
640,773 - -1.0
640,812 - -0.2
640,812 - -0.7
640,812 - +0.6
640,843 + -2.5
640,844 - +0.4
640,844 - +1.2
641,095 + ABIE53_000585 0.17 -1.6
641,096 - ABIE53_000585 0.17 +0.4
641,096 - ABIE53_000585 0.17 -1.5
641,096 - ABIE53_000585 0.17 +3.8
641,263 + ABIE53_000585 0.27 +0.7
641,263 + ABIE53_000585 0.27 +0.6
641,263 + ABIE53_000585 0.27 -0.6
641,263 + ABIE53_000585 0.27 -1.6
641,462 + ABIE53_000585 0.38 -1.6
641,462 + ABIE53_000585 0.38 -2.5
641,467 - ABIE53_000585 0.38 -0.2
641,509 + ABIE53_000585 0.41 -0.6
641,509 + ABIE53_000585 0.41 -1.6
641,510 - ABIE53_000585 0.41 -1.0
641,510 - ABIE53_000585 0.41 +0.0
641,584 + ABIE53_000585 0.45 +1.0
641,584 + ABIE53_000585 0.45 -0.3
641,584 + ABIE53_000585 0.45 -1.0
641,584 + ABIE53_000585 0.45 -2.8
641,585 - ABIE53_000585 0.45 -1.8
641,597 + ABIE53_000585 0.46 -1.5
641,597 + ABIE53_000585 0.46 +0.1
641,597 + ABIE53_000585 0.46 -0.2
641,727 + ABIE53_000585 0.53 -0.9
641,763 + ABIE53_000585 0.55 +0.3
641,763 + ABIE53_000585 0.55 -1.4
641,763 + ABIE53_000585 0.55 -0.8
641,763 + ABIE53_000585 0.55 -0.6
641,763 + ABIE53_000585 0.55 +0.4
641,763 + ABIE53_000585 0.55 -1.0
641,764 - ABIE53_000585 0.55 -0.2
641,764 - ABIE53_000585 0.55 -0.4
641,764 - ABIE53_000585 0.55 +0.3
641,764 - ABIE53_000585 0.55 -1.3
641,764 - ABIE53_000585 0.55 -1.0
641,764 - ABIE53_000585 0.55 -0.6
641,764 - ABIE53_000585 0.55 -1.9
641,988 + ABIE53_000585 0.68 +0.1
641,988 + ABIE53_000585 0.68 -1.9
641,989 - ABIE53_000585 0.68 -0.1
641,989 - ABIE53_000585 0.68 +1.5
642,085 - ABIE53_000585 0.73 -1.3
642,201 + ABIE53_000585 0.80 -0.6
642,201 + ABIE53_000585 0.80 -0.3
642,202 - ABIE53_000585 0.80 -1.6
642,205 + ABIE53_000585 0.80 -1.0
642,206 - ABIE53_000585 0.80 -0.6
642,285 + ABIE53_000585 0.85 +1.7
642,286 - ABIE53_000585 0.85 +1.2
642,286 - ABIE53_000585 0.85 +0.8
642,301 + ABIE53_000585 0.86 -2.8
642,301 + ABIE53_000585 0.86 +0.0
642,301 + ABIE53_000585 0.86 -1.0
642,302 - ABIE53_000585 0.86 -0.2
642,302 - ABIE53_000585 0.86 -0.3
642,302 - ABIE53_000585 0.86 -2.4
642,302 - ABIE53_000585 0.86 -1.3
642,302 - ABIE53_000585 0.86 -0.6
642,302 - ABIE53_000585 0.86 -2.0
642,302 - ABIE53_000585 0.86 +1.0
642,336 + ABIE53_000585 0.88 -0.7
642,336 + ABIE53_000585 0.88 +0.6
642,336 + ABIE53_000585 0.88 -1.8
642,337 - ABIE53_000585 0.88 -1.1
642,337 - ABIE53_000585 0.88 -2.6
642,352 - ABIE53_000585 0.89 +0.4
642,352 - ABIE53_000585 0.89 -0.3
642,361 + ABIE53_000585 0.89 +0.5
642,362 - ABIE53_000585 0.89 +1.0
642,422 - +0.0
642,459 + -1.4
642,549 + -1.0
642,574 + -0.3
642,575 - -2.0
642,580 + -0.6
642,652 + +0.3
642,653 - +1.2
642,705 + ABIE53_000586 0.11 +0.9
642,705 + ABIE53_000586 0.11 -0.7
642,705 + ABIE53_000586 0.11 +0.3
642,706 - ABIE53_000586 0.11 +0.1
642,706 - ABIE53_000586 0.11 -2.7
642,706 - ABIE53_000586 0.11 +0.6
642,876 + ABIE53_000586 0.24 -1.8
642,877 - ABIE53_000586 0.24 -0.8
642,948 + ABIE53_000586 0.29 -0.6
642,948 + ABIE53_000586 0.29 +1.0
642,948 + ABIE53_000586 0.29 -1.7
643,055 - ABIE53_000586 0.37 -2.1
643,055 - ABIE53_000586 0.37 +0.0
643,055 - ABIE53_000586 0.37 -0.4
643,055 - ABIE53_000586 0.37 -2.3
643,056 + ABIE53_000586 0.37 +1.0
643,056 + ABIE53_000586 0.37 +1.0
643,056 + ABIE53_000586 0.37 +0.1
643,056 + ABIE53_000586 0.37 -3.1
643,056 + ABIE53_000586 0.37 +0.5
643,056 + ABIE53_000586 0.37 -0.4
643,057 - ABIE53_000586 0.38 +0.8
643,057 - ABIE53_000586 0.38 -1.6
643,057 - ABIE53_000586 0.38 -1.6
643,057 - ABIE53_000586 0.38 -1.4
643,057 - ABIE53_000586 0.38 +1.2
643,057 - ABIE53_000586 0.38 -0.9
643,057 - ABIE53_000586 0.38 +1.0
643,057 - ABIE53_000586 0.38 -0.4
643,057 - ABIE53_000586 0.38 -0.4
643,101 + ABIE53_000586 0.41 -1.8
643,158 + ABIE53_000586 0.45 +0.0
643,158 + ABIE53_000586 0.45 -2.0
643,158 + ABIE53_000586 0.45 +0.0
643,158 + ABIE53_000586 0.45 +1.3
643,194 + ABIE53_000586 0.48 -0.3
643,305 + ABIE53_000586 0.56 +0.0
643,351 + ABIE53_000586 0.60 -1.0
643,352 - ABIE53_000586 0.60 +0.7
643,368 + ABIE53_000586 0.61 -1.1
643,369 - ABIE53_000586 0.61 -0.7
643,369 - ABIE53_000586 0.61 +0.0
643,369 - ABIE53_000586 0.61 -1.8
643,386 + ABIE53_000586 0.62 -0.1
643,386 + ABIE53_000586 0.62 +1.3
643,386 + ABIE53_000586 0.62 +0.6
643,386 + ABIE53_000586 0.62 +0.6
643,386 + ABIE53_000586 0.62 +1.0
643,386 + ABIE53_000586 0.62 +0.0
643,387 - ABIE53_000586 0.63 +0.6
643,387 - ABIE53_000586 0.63 +0.3
643,387 - ABIE53_000586 0.63 +1.6
643,387 - ABIE53_000586 0.63 -0.9
643,459 - ABIE53_000586 0.68 -0.5
643,459 - ABIE53_000586 0.68 -0.5
643,459 - ABIE53_000586 0.68 -0.9

Or see this region's nucleotide sequence