Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_000581

Experiment: Plant outgrowth control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_000580 and ABIE53_000581 are separated by 431 nucleotidesABIE53_000581 and ABIE53_000582 overlap by 13 nucleotides ABIE53_000580: ABIE53_000580 - adenosylmethionine-8-amino-7-oxononanoate aminotransferase, at 630,418 to 631,773 _000580 ABIE53_000581: ABIE53_000581 - filamentous hemagglutinin family protein, at 632,205 to 634,019 _000581 ABIE53_000582: ABIE53_000582 - adhesin HecA-like repeat protein, at 634,007 to 638,518 _000582 Position (kb) 632 633 634 635Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 631.254 kb on - strand, within ABIE53_000580at 631.313 kb on + strand, within ABIE53_000580at 631.614 kb on - strand, within ABIE53_000580at 631.634 kb on + strand, within ABIE53_000580at 631.634 kb on + strand, within ABIE53_000580at 631.635 kb on - strand, within ABIE53_000580at 631.635 kb on - strand, within ABIE53_000580at 631.666 kb on + strandat 631.785 kb on - strandat 631.785 kb on - strandat 631.875 kb on + strandat 631.875 kb on + strandat 631.876 kb on - strandat 631.900 kb on + strandat 632.089 kb on + strandat 632.089 kb on + strandat 632.090 kb on - strandat 632.090 kb on - strandat 632.096 kb on + strandat 632.097 kb on - strandat 632.294 kb on + strandat 632.295 kb on - strandat 632.422 kb on + strand, within ABIE53_000581at 632.423 kb on - strand, within ABIE53_000581at 632.535 kb on + strand, within ABIE53_000581at 632.535 kb on + strand, within ABIE53_000581at 632.535 kb on + strand, within ABIE53_000581at 632.535 kb on + strand, within ABIE53_000581at 632.535 kb on + strand, within ABIE53_000581at 632.535 kb on + strand, within ABIE53_000581at 632.535 kb on + strand, within ABIE53_000581at 632.536 kb on - strand, within ABIE53_000581at 632.536 kb on - strand, within ABIE53_000581at 632.536 kb on - strand, within ABIE53_000581at 632.536 kb on - strand, within ABIE53_000581at 632.536 kb on - strand, within ABIE53_000581at 632.536 kb on - strand, within ABIE53_000581at 632.536 kb on - strand, within ABIE53_000581at 632.536 kb on - strand, within ABIE53_000581at 632.536 kb on - strand, within ABIE53_000581at 632.536 kb on - strand, within ABIE53_000581at 632.536 kb on - strand, within ABIE53_000581at 632.536 kb on - strand, within ABIE53_000581at 632.537 kb on + strand, within ABIE53_000581at 632.537 kb on + strand, within ABIE53_000581at 632.537 kb on + strand, within ABIE53_000581at 632.537 kb on + strand, within ABIE53_000581at 632.538 kb on - strand, within ABIE53_000581at 632.538 kb on - strand, within ABIE53_000581at 632.538 kb on - strand, within ABIE53_000581at 632.675 kb on + strand, within ABIE53_000581at 632.675 kb on + strand, within ABIE53_000581at 632.675 kb on + strand, within ABIE53_000581at 632.676 kb on - strand, within ABIE53_000581at 632.676 kb on - strand, within ABIE53_000581at 632.678 kb on + strand, within ABIE53_000581at 632.678 kb on + strand, within ABIE53_000581at 632.679 kb on - strand, within ABIE53_000581at 632.679 kb on - strand, within ABIE53_000581at 632.679 kb on - strand, within ABIE53_000581at 632.826 kb on + strand, within ABIE53_000581at 632.827 kb on - strand, within ABIE53_000581at 632.856 kb on - strand, within ABIE53_000581at 632.873 kb on + strand, within ABIE53_000581at 632.873 kb on + strand, within ABIE53_000581at 632.873 kb on + strand, within ABIE53_000581at 632.873 kb on + strand, within ABIE53_000581at 632.874 kb on - strand, within ABIE53_000581at 632.874 kb on - strand, within ABIE53_000581at 633.007 kb on - strand, within ABIE53_000581at 633.090 kb on + strand, within ABIE53_000581at 633.090 kb on + strand, within ABIE53_000581at 633.090 kb on + strand, within ABIE53_000581at 633.090 kb on + strand, within ABIE53_000581at 633.091 kb on - strand, within ABIE53_000581at 633.091 kb on - strand, within ABIE53_000581at 633.101 kb on + strand, within ABIE53_000581at 633.101 kb on + strand, within ABIE53_000581at 633.101 kb on + strand, within ABIE53_000581at 633.279 kb on + strand, within ABIE53_000581at 633.279 kb on + strand, within ABIE53_000581at 633.280 kb on - strand, within ABIE53_000581at 633.280 kb on - strand, within ABIE53_000581at 633.280 kb on - strand, within ABIE53_000581at 633.280 kb on - strand, within ABIE53_000581at 633.280 kb on - strand, within ABIE53_000581at 633.314 kb on + strand, within ABIE53_000581at 633.314 kb on + strand, within ABIE53_000581at 633.315 kb on - strand, within ABIE53_000581at 633.323 kb on + strand, within ABIE53_000581at 633.326 kb on + strand, within ABIE53_000581at 633.327 kb on - strand, within ABIE53_000581at 633.327 kb on - strand, within ABIE53_000581at 633.389 kb on + strand, within ABIE53_000581at 633.542 kb on + strand, within ABIE53_000581at 633.542 kb on + strand, within ABIE53_000581at 633.543 kb on - strand, within ABIE53_000581at 633.543 kb on - strand, within ABIE53_000581at 633.543 kb on - strand, within ABIE53_000581at 633.594 kb on - strand, within ABIE53_000581at 633.635 kb on + strand, within ABIE53_000581at 633.635 kb on + strand, within ABIE53_000581at 633.751 kb on + strand, within ABIE53_000581at 633.854 kb on + strandat 633.854 kb on + strandat 634.373 kb on - strandat 634.373 kb on - strandat 634.457 kb on - strandat 634.714 kb on + strand, within ABIE53_000582at 634.714 kb on + strand, within ABIE53_000582at 634.715 kb on - strand, within ABIE53_000582at 634.715 kb on - strand, within ABIE53_000582at 634.817 kb on + strand, within ABIE53_000582at 634.817 kb on + strand, within ABIE53_000582

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant outgrowth control
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631,254 - ABIE53_000580 0.62 -0.6
631,313 + ABIE53_000580 0.66 -0.3
631,614 - ABIE53_000580 0.88 +0.9
631,634 + ABIE53_000580 0.90 +0.2
631,634 + ABIE53_000580 0.90 -1.6
631,635 - ABIE53_000580 0.90 -0.6
631,635 - ABIE53_000580 0.90 -2.0
631,666 + +0.4
631,785 - +0.0
631,785 - -0.6
631,875 + -1.3
631,875 + -0.6
631,876 - +0.0
631,900 + +1.7
632,089 + -0.5
632,089 + +0.4
632,090 - -0.6
632,090 - +0.6
632,096 + +0.7
632,097 - +0.1
632,294 + +2.0
632,295 - -0.3
632,422 + ABIE53_000581 0.12 +1.0
632,423 - ABIE53_000581 0.12 -0.0
632,535 + ABIE53_000581 0.18 +0.2
632,535 + ABIE53_000581 0.18 -0.1
632,535 + ABIE53_000581 0.18 -1.2
632,535 + ABIE53_000581 0.18 -1.3
632,535 + ABIE53_000581 0.18 +1.3
632,535 + ABIE53_000581 0.18 -0.8
632,535 + ABIE53_000581 0.18 +2.7
632,536 - ABIE53_000581 0.18 +0.7
632,536 - ABIE53_000581 0.18 +1.0
632,536 - ABIE53_000581 0.18 -0.7
632,536 - ABIE53_000581 0.18 -1.8
632,536 - ABIE53_000581 0.18 -0.8
632,536 - ABIE53_000581 0.18 -2.4
632,536 - ABIE53_000581 0.18 -0.8
632,536 - ABIE53_000581 0.18 +0.4
632,536 - ABIE53_000581 0.18 +2.4
632,536 - ABIE53_000581 0.18 -2.0
632,536 - ABIE53_000581 0.18 +0.0
632,536 - ABIE53_000581 0.18 +0.1
632,537 + ABIE53_000581 0.18 +0.1
632,537 + ABIE53_000581 0.18 +0.0
632,537 + ABIE53_000581 0.18 -1.8
632,537 + ABIE53_000581 0.18 -0.6
632,538 - ABIE53_000581 0.18 -0.6
632,538 - ABIE53_000581 0.18 +0.3
632,538 - ABIE53_000581 0.18 +0.0
632,675 + ABIE53_000581 0.26 +0.6
632,675 + ABIE53_000581 0.26 +1.0
632,675 + ABIE53_000581 0.26 -0.3
632,676 - ABIE53_000581 0.26 +1.6
632,676 - ABIE53_000581 0.26 -1.3
632,678 + ABIE53_000581 0.26 -0.8
632,678 + ABIE53_000581 0.26 -0.2
632,679 - ABIE53_000581 0.26 -0.7
632,679 - ABIE53_000581 0.26 -1.0
632,679 - ABIE53_000581 0.26 -0.6
632,826 + ABIE53_000581 0.34 -2.2
632,827 - ABIE53_000581 0.34 +0.7
632,856 - ABIE53_000581 0.36 -1.2
632,873 + ABIE53_000581 0.37 +3.6
632,873 + ABIE53_000581 0.37 -1.5
632,873 + ABIE53_000581 0.37 -0.7
632,873 + ABIE53_000581 0.37 -0.3
632,874 - ABIE53_000581 0.37 -0.5
632,874 - ABIE53_000581 0.37 -0.6
633,007 - ABIE53_000581 0.44 -2.0
633,090 + ABIE53_000581 0.49 -0.4
633,090 + ABIE53_000581 0.49 -0.3
633,090 + ABIE53_000581 0.49 +3.3
633,090 + ABIE53_000581 0.49 +0.6
633,091 - ABIE53_000581 0.49 -0.3
633,091 - ABIE53_000581 0.49 -1.3
633,101 + ABIE53_000581 0.49 -0.4
633,101 + ABIE53_000581 0.49 -0.9
633,101 + ABIE53_000581 0.49 +2.7
633,279 + ABIE53_000581 0.59 +0.0
633,279 + ABIE53_000581 0.59 -0.3
633,280 - ABIE53_000581 0.59 -0.4
633,280 - ABIE53_000581 0.59 +0.0
633,280 - ABIE53_000581 0.59 -1.0
633,280 - ABIE53_000581 0.59 +0.7
633,280 - ABIE53_000581 0.59 +0.3
633,314 + ABIE53_000581 0.61 -1.6
633,314 + ABIE53_000581 0.61 -0.9
633,315 - ABIE53_000581 0.61 -0.2
633,323 + ABIE53_000581 0.62 -0.8
633,326 + ABIE53_000581 0.62 -2.0
633,327 - ABIE53_000581 0.62 -1.0
633,327 - ABIE53_000581 0.62 +1.0
633,389 + ABIE53_000581 0.65 +0.3
633,542 + ABIE53_000581 0.74 -0.1
633,542 + ABIE53_000581 0.74 -0.4
633,543 - ABIE53_000581 0.74 +3.3
633,543 - ABIE53_000581 0.74 -1.8
633,543 - ABIE53_000581 0.74 -2.0
633,594 - ABIE53_000581 0.77 +0.4
633,635 + ABIE53_000581 0.79 -2.0
633,635 + ABIE53_000581 0.79 -1.6
633,751 + ABIE53_000581 0.85 -0.6
633,854 + -0.9
633,854 + -0.6
634,373 - -1.6
634,373 - +0.4
634,457 - -1.3
634,714 + ABIE53_000582 0.16 -1.6
634,714 + ABIE53_000582 0.16 -3.1
634,715 - ABIE53_000582 0.16 -1.0
634,715 - ABIE53_000582 0.16 +0.8
634,817 + ABIE53_000582 0.18 -0.6
634,817 + ABIE53_000582 0.18 -0.6

Or see this region's nucleotide sequence