Experiment: LB 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4670 and Pf1N1B4_4671 are separated by 285 nucleotides Pf1N1B4_4671 and Pf1N1B4_4672 are separated by 151 nucleotides
Pf1N1B4_4670 - Sensory box/GGDEF family protein, at 5,149,861 to 5,151,942
_4670
Pf1N1B4_4671 - Short-chain dehydrogenase/reductase SDR, at 5,152,228 to 5,152,974
_4671
Pf1N1B4_4672 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 5,153,126 to 5,154,535
_4672
Position (kb)
5152
5153 Strain fitness (log2 ratio)
-1
0
1 at 5151.406 kb on + strand, within Pf1N1B4_4670 at 5151.407 kb on - strand at 5151.407 kb on - strand, within Pf1N1B4_4670 at 5151.646 kb on + strand, within Pf1N1B4_4670 at 5151.647 kb on - strand, within Pf1N1B4_4670 at 5151.865 kb on + strand at 5151.866 kb on - strand at 5152.113 kb on + strand at 5152.114 kb on - strand at 5152.114 kb on - strand at 5152.324 kb on + strand at 5152.687 kb on + strand, within Pf1N1B4_4671 at 5152.687 kb on + strand, within Pf1N1B4_4671 at 5152.688 kb on - strand, within Pf1N1B4_4671 at 5152.688 kb on - strand, within Pf1N1B4_4671 at 5152.688 kb on - strand, within Pf1N1B4_4671 at 5152.696 kb on + strand, within Pf1N1B4_4671 at 5152.799 kb on - strand, within Pf1N1B4_4671 at 5152.799 kb on - strand, within Pf1N1B4_4671 at 5153.210 kb on - strand at 5153.674 kb on - strand, within Pf1N1B4_4672
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C remove 5,151,406 + Pf1N1B4_4670 0.74 +1.4 5,151,407 - -1.0 5,151,407 - Pf1N1B4_4670 0.74 +0.4 5,151,646 + Pf1N1B4_4670 0.86 +0.2 5,151,647 - Pf1N1B4_4670 0.86 +0.3 5,151,865 + +1.6 5,151,866 - -0.8 5,152,113 + -0.7 5,152,114 - -0.4 5,152,114 - +1.6 5,152,324 + +0.7 5,152,687 + Pf1N1B4_4671 0.61 -0.3 5,152,687 + Pf1N1B4_4671 0.61 +0.5 5,152,688 - Pf1N1B4_4671 0.62 +0.2 5,152,688 - Pf1N1B4_4671 0.62 -0.3 5,152,688 - Pf1N1B4_4671 0.62 -0.4 5,152,696 + Pf1N1B4_4671 0.63 -0.9 5,152,799 - Pf1N1B4_4671 0.76 -1.2 5,152,799 - Pf1N1B4_4671 0.76 -1.3 5,153,210 - +0.3 5,153,674 - Pf1N1B4_4672 0.39 +0.0
Or see this region's nucleotide sequence