Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05235

Experiment: Formate with Bacitracin 15.6 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05230 and MMP_RS05235 are separated by 154 nucleotidesMMP_RS05235 and MMP_RS05240 are separated by 214 nucleotides MMP_RS05230: MMP_RS05230 - glutamate--tRNA ligase, at 995,327 to 996,994 _RS05230 MMP_RS05235: MMP_RS05235 - exodeoxyribonuclease III, at 997,149 to 997,898 _RS05235 MMP_RS05240: MMP_RS05240 - carbamoyl-phosphate synthase large subunit, at 998,113 to 1,001,358 _RS05240 Position (kb) 997 998Strain fitness (log2 ratio) -2 -1 0 1 2 3at 996.438 kb on - strandat 996.909 kb on + strandat 996.972 kb on - strandat 996.972 kb on - strandat 996.973 kb on + strandat 996.981 kb on + strandat 996.994 kb on - strandat 996.999 kb on + strandat 997.010 kb on - strandat 997.043 kb on - strandat 997.102 kb on - strandat 997.109 kb on + strandat 997.151 kb on + strandat 997.158 kb on - strandat 997.159 kb on + strandat 997.160 kb on - strandat 997.160 kb on - strandat 997.192 kb on + strandat 997.204 kb on + strandat 997.204 kb on + strandat 997.205 kb on - strandat 997.205 kb on - strandat 997.205 kb on - strandat 997.205 kb on - strandat 997.205 kb on - strandat 997.205 kb on - strandat 997.205 kb on - strandat 997.205 kb on - strandat 997.205 kb on - strandat 997.205 kb on - strandat 997.205 kb on - strandat 997.205 kb on - strandat 997.206 kb on + strandat 997.206 kb on + strandat 997.206 kb on + strandat 997.206 kb on + strandat 997.206 kb on + strandat 997.206 kb on + strandat 997.206 kb on + strandat 997.206 kb on + strandat 997.206 kb on + strandat 997.206 kb on + strandat 997.206 kb on + strandat 997.206 kb on + strandat 997.206 kb on + strandat 997.207 kb on - strandat 997.207 kb on - strandat 997.207 kb on - strandat 997.208 kb on + strandat 997.208 kb on + strandat 997.208 kb on + strandat 997.244 kb on - strand, within MMP_RS05235at 997.257 kb on - strand, within MMP_RS05235at 997.258 kb on + strand, within MMP_RS05235at 997.312 kb on - strand, within MMP_RS05235at 997.317 kb on + strand, within MMP_RS05235at 997.600 kb on - strand, within MMP_RS05235at 997.603 kb on - strand, within MMP_RS05235at 997.622 kb on - strand, within MMP_RS05235at 997.800 kb on - strand, within MMP_RS05235at 997.800 kb on - strand, within MMP_RS05235at 997.801 kb on + strand, within MMP_RS05235at 997.875 kb on - strandat 997.876 kb on + strandat 997.876 kb on + strandat 997.926 kb on + strandat 997.931 kb on + strandat 997.933 kb on - strandat 997.936 kb on + strandat 997.945 kb on + strandat 997.990 kb on + strandat 998.008 kb on + strandat 998.008 kb on + strandat 998.011 kb on - strandat 998.027 kb on - strandat 998.028 kb on + strandat 998.028 kb on + strandat 998.047 kb on - strandat 998.081 kb on - strandat 998.084 kb on - strandat 998.085 kb on + strandat 998.834 kb on - strandat 998.834 kb on - strandat 998.877 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate with Bacitracin 15.6 uM
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996,438 - +1.9
996,909 + +1.6
996,972 - -1.9
996,972 - +0.4
996,973 + +0.2
996,981 + -1.5
996,994 - +0.8
996,999 + -1.4
997,010 - -0.4
997,043 - -0.3
997,102 - -0.2
997,109 + -0.1
997,151 + +0.5
997,158 - +1.0
997,159 + +0.9
997,160 - +3.7
997,160 - -0.1
997,192 + -1.4
997,204 + -0.5
997,204 + +0.4
997,205 - -1.6
997,205 - -0.9
997,205 - -0.1
997,205 - +0.7
997,205 - +0.4
997,205 - -1.1
997,205 - -1.5
997,205 - +0.2
997,205 - +0.4
997,205 - -0.2
997,205 - -1.8
997,205 - +0.6
997,206 + -0.4
997,206 + +0.5
997,206 + -0.2
997,206 + -1.3
997,206 + +0.8
997,206 + -0.7
997,206 + -1.1
997,206 + +0.4
997,206 + -0.4
997,206 + +0.1
997,206 + -0.5
997,206 + +0.6
997,206 + +0.3
997,207 - -0.3
997,207 - -0.0
997,207 - +1.2
997,208 + -1.0
997,208 + +0.1
997,208 + +1.3
997,244 - MMP_RS05235 0.13 +0.2
997,257 - MMP_RS05235 0.14 +0.5
997,258 + MMP_RS05235 0.15 +0.5
997,312 - MMP_RS05235 0.22 -1.1
997,317 + MMP_RS05235 0.22 -0.2
997,600 - MMP_RS05235 0.60 -1.6
997,603 - MMP_RS05235 0.61 -0.2
997,622 - MMP_RS05235 0.63 -0.6
997,800 - MMP_RS05235 0.87 -0.9
997,800 - MMP_RS05235 0.87 -0.4
997,801 + MMP_RS05235 0.87 -0.5
997,875 - -0.6
997,876 + -1.6
997,876 + -0.3
997,926 + +0.3
997,931 + -1.0
997,933 - +0.2
997,936 + -0.1
997,945 + -0.7
997,990 + +0.7
998,008 + +1.6
998,008 + +0.3
998,011 - +1.2
998,027 - +1.9
998,028 + +1.6
998,028 + +0.4
998,047 - +1.8
998,081 - +0.4
998,084 - +0.4
998,085 + -0.2
998,834 - -0.1
998,834 - +1.3
998,877 + +0.7

Or see this region's nucleotide sequence