Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03575

Experiment: Formate with Bacitracin 15.6 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS03570 and MMP_RS03575 are separated by 164 nucleotidesMMP_RS03575 and MMP_RS03580 are separated by 99 nucleotides MMP_RS03570: MMP_RS03570 - uracil-xanthine permease family protein, at 669,125 to 670,366 _RS03570 MMP_RS03575: MMP_RS03575 - ECF transporter S component, at 670,531 to 671,097 _RS03575 MMP_RS03580: MMP_RS03580 - signal recognition particle-docking protein FtsY, at 671,197 to 672,348 _RS03580 Position (kb) 670 671 672Strain fitness (log2 ratio) -2 -1 0 1 2at 669.687 kb on + strand, within MMP_RS03570at 669.798 kb on + strand, within MMP_RS03570at 669.825 kb on + strand, within MMP_RS03570at 669.867 kb on + strand, within MMP_RS03570at 669.883 kb on - strand, within MMP_RS03570at 669.884 kb on + strand, within MMP_RS03570at 669.906 kb on + strand, within MMP_RS03570at 669.914 kb on - strand, within MMP_RS03570at 669.931 kb on - strand, within MMP_RS03570at 669.945 kb on - strand, within MMP_RS03570at 670.069 kb on - strand, within MMP_RS03570at 670.334 kb on - strandat 670.335 kb on + strandat 670.350 kb on + strandat 670.350 kb on + strandat 670.350 kb on + strandat 670.356 kb on + strandat 670.392 kb on + strandat 670.437 kb on + strandat 670.440 kb on - strandat 670.466 kb on - strandat 670.536 kb on - strandat 670.558 kb on - strandat 670.559 kb on + strandat 670.583 kb on + strandat 670.598 kb on - strand, within MMP_RS03575at 670.616 kb on + strand, within MMP_RS03575at 670.655 kb on - strand, within MMP_RS03575at 670.656 kb on + strand, within MMP_RS03575at 670.656 kb on + strand, within MMP_RS03575at 670.656 kb on + strand, within MMP_RS03575at 670.671 kb on - strand, within MMP_RS03575at 670.683 kb on - strand, within MMP_RS03575at 670.778 kb on + strand, within MMP_RS03575at 670.805 kb on + strand, within MMP_RS03575at 670.874 kb on + strand, within MMP_RS03575at 670.908 kb on - strand, within MMP_RS03575at 670.908 kb on - strand, within MMP_RS03575at 670.908 kb on - strand, within MMP_RS03575at 670.981 kb on - strand, within MMP_RS03575at 671.057 kb on + strandat 671.088 kb on - strandat 671.089 kb on + strandat 671.143 kb on + strandat 671.143 kb on + strandat 671.144 kb on - strandat 671.144 kb on - strandat 671.152 kb on + strandat 671.185 kb on - strandat 671.312 kb on + strandat 671.410 kb on + strand, within MMP_RS03580at 671.521 kb on - strand, within MMP_RS03580at 671.606 kb on - strand, within MMP_RS03580at 671.754 kb on - strand, within MMP_RS03580at 671.960 kb on + strand, within MMP_RS03580at 672.061 kb on + strand, within MMP_RS03580

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Formate with Bacitracin 15.6 uM
remove
669,687 + MMP_RS03570 0.45 +0.9
669,798 + MMP_RS03570 0.54 -0.0
669,825 + MMP_RS03570 0.56 +0.3
669,867 + MMP_RS03570 0.60 -2.3
669,883 - MMP_RS03570 0.61 -1.0
669,884 + MMP_RS03570 0.61 -0.2
669,906 + MMP_RS03570 0.63 +0.8
669,914 - MMP_RS03570 0.64 -0.9
669,931 - MMP_RS03570 0.65 +0.4
669,945 - MMP_RS03570 0.66 -0.4
670,069 - MMP_RS03570 0.76 -0.3
670,334 - +0.4
670,335 + +0.3
670,350 + +1.3
670,350 + -2.6
670,350 + +0.0
670,356 + +1.1
670,392 + +0.0
670,437 + -1.3
670,440 - -0.1
670,466 - -0.3
670,536 - +0.3
670,558 - -0.6
670,559 + -0.5
670,583 + +0.7
670,598 - MMP_RS03575 0.12 -0.5
670,616 + MMP_RS03575 0.15 -0.8
670,655 - MMP_RS03575 0.22 -0.8
670,656 + MMP_RS03575 0.22 -0.6
670,656 + MMP_RS03575 0.22 +1.2
670,656 + MMP_RS03575 0.22 -0.5
670,671 - MMP_RS03575 0.25 -0.2
670,683 - MMP_RS03575 0.27 -0.2
670,778 + MMP_RS03575 0.44 -2.1
670,805 + MMP_RS03575 0.48 -0.4
670,874 + MMP_RS03575 0.60 -2.1
670,908 - MMP_RS03575 0.66 +0.2
670,908 - MMP_RS03575 0.66 -0.2
670,908 - MMP_RS03575 0.66 -0.7
670,981 - MMP_RS03575 0.79 -0.8
671,057 + -1.5
671,088 - -0.9
671,089 + -1.5
671,143 + +0.8
671,143 + +0.8
671,144 - -0.9
671,144 - +0.5
671,152 + +0.2
671,185 - -0.0
671,312 + +2.6
671,410 + MMP_RS03580 0.18 -1.7
671,521 - MMP_RS03580 0.28 +0.6
671,606 - MMP_RS03580 0.36 +0.4
671,754 - MMP_RS03580 0.48 +0.3
671,960 + MMP_RS03580 0.66 +1.2
672,061 + MMP_RS03580 0.75 +2.7

Or see this region's nucleotide sequence