Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03265

Experiment: Formate with Bacitracin 15.6 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03260 and MMP_RS03265 are separated by 19 nucleotidesMMP_RS03265 and MMP_RS03270 are separated by 46 nucleotides MMP_RS03260: MMP_RS03260 - methyl coenzyme M reductase system component A2, at 614,221 to 615,816 _RS03260 MMP_RS03265: MMP_RS03265 - sugar phosphate isomerase/epimerase, at 615,836 to 616,645 _RS03265 MMP_RS03270: MMP_RS03270 - ADP-ribosylglycohydrolase family protein, at 616,692 to 617,600 _RS03270 Position (kb) 615 616 617Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 614.896 kb on + strandat 615.296 kb on - strandat 615.669 kb on - strandat 615.672 kb on + strandat 615.672 kb on + strandat 615.871 kb on - strandat 615.875 kb on - strandat 615.876 kb on + strandat 615.880 kb on - strandat 615.880 kb on - strandat 615.880 kb on - strandat 615.884 kb on - strandat 615.913 kb on - strandat 615.915 kb on - strandat 615.915 kb on - strandat 615.916 kb on + strandat 615.916 kb on + strandat 615.916 kb on + strandat 615.917 kb on - strand, within MMP_RS03265at 615.930 kb on + strand, within MMP_RS03265at 615.958 kb on - strand, within MMP_RS03265at 615.981 kb on + strand, within MMP_RS03265at 616.193 kb on - strand, within MMP_RS03265at 616.279 kb on - strand, within MMP_RS03265at 616.280 kb on + strand, within MMP_RS03265at 616.409 kb on + strand, within MMP_RS03265at 616.409 kb on + strand, within MMP_RS03265at 616.454 kb on - strand, within MMP_RS03265at 616.454 kb on - strand, within MMP_RS03265at 616.454 kb on - strand, within MMP_RS03265at 616.455 kb on + strand, within MMP_RS03265at 616.455 kb on + strand, within MMP_RS03265at 616.455 kb on + strand, within MMP_RS03265at 616.456 kb on - strand, within MMP_RS03265at 616.457 kb on + strand, within MMP_RS03265at 616.460 kb on - strand, within MMP_RS03265at 616.460 kb on - strand, within MMP_RS03265at 616.461 kb on + strand, within MMP_RS03265at 616.466 kb on - strand, within MMP_RS03265at 616.466 kb on - strand, within MMP_RS03265at 616.496 kb on - strand, within MMP_RS03265at 616.496 kb on - strand, within MMP_RS03265at 616.497 kb on + strand, within MMP_RS03265at 616.506 kb on + strand, within MMP_RS03265at 616.581 kb on + strandat 616.581 kb on + strandat 616.582 kb on - strandat 616.582 kb on - strandat 616.583 kb on + strandat 616.587 kb on + strandat 616.606 kb on + strandat 616.656 kb on - strandat 616.656 kb on - strandat 616.672 kb on - strandat 616.962 kb on - strand, within MMP_RS03270at 616.970 kb on - strand, within MMP_RS03270at 616.970 kb on - strand, within MMP_RS03270at 617.033 kb on - strand, within MMP_RS03270at 617.127 kb on + strand, within MMP_RS03270at 617.434 kb on - strand, within MMP_RS03270at 617.472 kb on - strand, within MMP_RS03270

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate with Bacitracin 15.6 uM
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614,896 + +1.9
615,296 - +2.3
615,669 - +2.9
615,672 + +2.8
615,672 + +2.2
615,871 - +2.2
615,875 - +0.3
615,876 + +0.4
615,880 - +0.2
615,880 - -1.6
615,880 - -0.3
615,884 - -0.7
615,913 - +0.1
615,915 - -0.8
615,915 - +1.3
615,916 + +0.2
615,916 + +0.8
615,916 + +0.8
615,917 - MMP_RS03265 0.10 +0.3
615,930 + MMP_RS03265 0.12 +0.2
615,958 - MMP_RS03265 0.15 -1.3
615,981 + MMP_RS03265 0.18 -0.7
616,193 - MMP_RS03265 0.44 -0.3
616,279 - MMP_RS03265 0.55 -0.2
616,280 + MMP_RS03265 0.55 +0.4
616,409 + MMP_RS03265 0.71 -0.2
616,409 + MMP_RS03265 0.71 -1.4
616,454 - MMP_RS03265 0.76 +0.2
616,454 - MMP_RS03265 0.76 -1.4
616,454 - MMP_RS03265 0.76 +0.6
616,455 + MMP_RS03265 0.76 -0.3
616,455 + MMP_RS03265 0.76 +0.2
616,455 + MMP_RS03265 0.76 -1.8
616,456 - MMP_RS03265 0.77 -0.9
616,457 + MMP_RS03265 0.77 -0.9
616,460 - MMP_RS03265 0.77 -2.9
616,460 - MMP_RS03265 0.77 +0.1
616,461 + MMP_RS03265 0.77 -0.5
616,466 - MMP_RS03265 0.78 +0.4
616,466 - MMP_RS03265 0.78 -1.2
616,496 - MMP_RS03265 0.81 -1.0
616,496 - MMP_RS03265 0.81 -1.1
616,497 + MMP_RS03265 0.82 -0.3
616,506 + MMP_RS03265 0.83 -0.6
616,581 + +0.1
616,581 + -1.1
616,582 - -0.2
616,582 - +0.9
616,583 + -1.3
616,587 + -0.3
616,606 + -1.1
616,656 - +0.3
616,656 - +0.9
616,672 - +0.5
616,962 - MMP_RS03270 0.30 +3.1
616,970 - MMP_RS03270 0.31 +0.7
616,970 - MMP_RS03270 0.31 -0.5
617,033 - MMP_RS03270 0.38 -2.0
617,127 + MMP_RS03270 0.48 -0.3
617,434 - MMP_RS03270 0.82 +0.4
617,472 - MMP_RS03270 0.86 +2.1

Or see this region's nucleotide sequence