Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02760

Experiment: Formate with Bacitracin 15.6 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02755 and MMP_RS02760 are separated by 12 nucleotidesMMP_RS02760 and MMP_RS02765 are separated by 4 nucleotidesMMP_RS02765 and MMP_RS02770 are separated by 194 nucleotides MMP_RS02755: MMP_RS02755 - ABC transporter permease, at 526,565 to 527,812 _RS02755 MMP_RS02760: MMP_RS02760 - COG1361 S-layer family protein, at 527,825 to 529,141 _RS02760 MMP_RS02765: MMP_RS02765 - ABC transporter ATP-binding protein, at 529,146 to 529,850 _RS02765 MMP_RS02770: MMP_RS02770 - hypothetical protein, at 530,045 to 530,620 _RS02770 Position (kb) 527 528 529 530Strain fitness (log2 ratio) -2 -1 0 1 2at 526.857 kb on + strand, within MMP_RS02755at 526.892 kb on + strand, within MMP_RS02755at 526.915 kb on - strand, within MMP_RS02755at 527.462 kb on + strand, within MMP_RS02755at 527.525 kb on - strand, within MMP_RS02755at 527.535 kb on + strand, within MMP_RS02755at 527.642 kb on - strand, within MMP_RS02755at 527.642 kb on - strand, within MMP_RS02755at 527.643 kb on + strand, within MMP_RS02755at 527.643 kb on + strand, within MMP_RS02755at 527.665 kb on - strand, within MMP_RS02755at 527.697 kb on + strandat 527.762 kb on + strandat 527.771 kb on - strandat 527.789 kb on + strandat 527.817 kb on + strandat 527.882 kb on - strandat 527.883 kb on + strandat 528.041 kb on + strand, within MMP_RS02760at 528.084 kb on + strand, within MMP_RS02760at 528.113 kb on - strand, within MMP_RS02760at 528.114 kb on + strand, within MMP_RS02760at 528.114 kb on + strand, within MMP_RS02760at 528.146 kb on + strand, within MMP_RS02760at 528.153 kb on + strand, within MMP_RS02760at 528.173 kb on + strand, within MMP_RS02760at 528.208 kb on - strand, within MMP_RS02760at 528.295 kb on - strand, within MMP_RS02760at 528.301 kb on - strand, within MMP_RS02760at 528.302 kb on + strand, within MMP_RS02760at 528.302 kb on + strand, within MMP_RS02760at 528.359 kb on - strand, within MMP_RS02760at 528.401 kb on - strand, within MMP_RS02760at 528.419 kb on - strand, within MMP_RS02760at 528.420 kb on + strand, within MMP_RS02760at 528.478 kb on + strand, within MMP_RS02760at 528.481 kb on - strand, within MMP_RS02760at 528.493 kb on - strand, within MMP_RS02760at 528.625 kb on - strand, within MMP_RS02760at 528.718 kb on - strand, within MMP_RS02760at 528.759 kb on + strand, within MMP_RS02760at 528.852 kb on + strand, within MMP_RS02760at 528.921 kb on + strand, within MMP_RS02760at 528.964 kb on - strand, within MMP_RS02760at 529.143 kb on + strandat 529.225 kb on - strand, within MMP_RS02765at 529.442 kb on - strand, within MMP_RS02765at 529.560 kb on - strand, within MMP_RS02765at 529.566 kb on + strand, within MMP_RS02765at 529.578 kb on - strand, within MMP_RS02765at 529.694 kb on - strand, within MMP_RS02765at 529.850 kb on - strandat 529.946 kb on + strandat 529.972 kb on + strandat 530.014 kb on - strandat 530.014 kb on - strandat 530.042 kb on - strandat 530.102 kb on + strandat 530.104 kb on - strand, within MMP_RS02770at 530.104 kb on - strand, within MMP_RS02770at 530.104 kb on - strand, within MMP_RS02770at 530.104 kb on - strand, within MMP_RS02770

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate with Bacitracin 15.6 uM
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526,857 + MMP_RS02755 0.23 -1.2
526,892 + MMP_RS02755 0.26 -0.7
526,915 - MMP_RS02755 0.28 -0.1
527,462 + MMP_RS02755 0.72 -1.7
527,525 - MMP_RS02755 0.77 -2.1
527,535 + MMP_RS02755 0.78 -1.4
527,642 - MMP_RS02755 0.86 -0.0
527,642 - MMP_RS02755 0.86 -1.2
527,643 + MMP_RS02755 0.86 -1.5
527,643 + MMP_RS02755 0.86 -1.2
527,665 - MMP_RS02755 0.88 -0.6
527,697 + -0.3
527,762 + -0.5
527,771 - -1.0
527,789 + -1.0
527,817 + -0.7
527,882 - -1.8
527,883 + -0.6
528,041 + MMP_RS02760 0.16 -0.2
528,084 + MMP_RS02760 0.20 -1.5
528,113 - MMP_RS02760 0.22 -0.6
528,114 + MMP_RS02760 0.22 -1.5
528,114 + MMP_RS02760 0.22 -0.8
528,146 + MMP_RS02760 0.24 -0.7
528,153 + MMP_RS02760 0.25 -1.0
528,173 + MMP_RS02760 0.26 +0.1
528,208 - MMP_RS02760 0.29 +0.8
528,295 - MMP_RS02760 0.36 -2.3
528,301 - MMP_RS02760 0.36 -1.3
528,302 + MMP_RS02760 0.36 -1.2
528,302 + MMP_RS02760 0.36 -0.0
528,359 - MMP_RS02760 0.41 -0.8
528,401 - MMP_RS02760 0.44 -0.9
528,419 - MMP_RS02760 0.45 +1.9
528,420 + MMP_RS02760 0.45 +0.1
528,478 + MMP_RS02760 0.50 +0.4
528,481 - MMP_RS02760 0.50 -0.0
528,493 - MMP_RS02760 0.51 -1.4
528,625 - MMP_RS02760 0.61 -1.1
528,718 - MMP_RS02760 0.68 -0.4
528,759 + MMP_RS02760 0.71 +0.3
528,852 + MMP_RS02760 0.78 -1.2
528,921 + MMP_RS02760 0.83 +0.2
528,964 - MMP_RS02760 0.86 -1.4
529,143 + -1.0
529,225 - MMP_RS02765 0.11 -0.8
529,442 - MMP_RS02765 0.42 -0.6
529,560 - MMP_RS02765 0.59 -1.0
529,566 + MMP_RS02765 0.60 -1.1
529,578 - MMP_RS02765 0.61 -0.8
529,694 - MMP_RS02765 0.78 -2.6
529,850 - -1.3
529,946 + -0.6
529,972 + -0.4
530,014 - +1.1
530,014 - +1.2
530,042 - +0.9
530,102 + +1.6
530,104 - MMP_RS02770 0.10 +1.5
530,104 - MMP_RS02770 0.10 +1.0
530,104 - MMP_RS02770 0.10 +0.7
530,104 - MMP_RS02770 0.10 +1.5

Or see this region's nucleotide sequence