Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02315

Experiment: Formate with Bacitracin 15.6 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02305 and MMP_RS02310 are separated by 266 nucleotidesMMP_RS02310 and MMP_RS02315 are separated by 0 nucleotidesMMP_RS02315 and MMP_RS02320 overlap by 14 nucleotides MMP_RS02305: MMP_RS02305 - DUF378 domain-containing protein, at 434,515 to 434,763 _RS02305 MMP_RS02310: MMP_RS02310 - RimK-like ATPgrasp N-terminal domain-containing protein, at 435,030 to 435,635 _RS02310 MMP_RS02315: MMP_RS02315 - RimK family alpha-L-glutamate ligase, at 435,636 to 436,586 _RS02315 MMP_RS02320: MMP_RS02320 - glutamate-cysteine ligase family protein, at 436,573 to 437,676 _RS02320 Position (kb) 435 436 437Strain fitness (log2 ratio) -2 -1 0 1at 434.653 kb on + strand, within MMP_RS02305at 434.665 kb on - strand, within MMP_RS02305at 434.679 kb on - strand, within MMP_RS02305at 434.680 kb on + strand, within MMP_RS02305at 434.680 kb on + strand, within MMP_RS02305at 434.728 kb on + strand, within MMP_RS02305at 434.803 kb on - strandat 434.803 kb on - strandat 435.312 kb on - strand, within MMP_RS02310at 435.922 kb on + strand, within MMP_RS02315at 436.008 kb on + strand, within MMP_RS02315at 436.109 kb on + strand, within MMP_RS02315at 436.278 kb on - strand, within MMP_RS02315at 436.326 kb on + strand, within MMP_RS02315at 436.408 kb on + strand, within MMP_RS02315at 436.473 kb on - strand, within MMP_RS02315at 436.491 kb on - strand, within MMP_RS02315at 436.492 kb on + strandat 436.494 kb on + strandat 436.518 kb on - strandat 436.518 kb on - strandat 436.594 kb on - strandat 436.595 kb on + strandat 436.641 kb on + strandat 436.818 kb on - strand, within MMP_RS02320at 436.818 kb on - strand, within MMP_RS02320at 436.822 kb on + strand, within MMP_RS02320at 436.822 kb on + strand, within MMP_RS02320at 436.832 kb on - strand, within MMP_RS02320at 436.925 kb on - strand, within MMP_RS02320at 436.985 kb on + strand, within MMP_RS02320at 437.007 kb on - strand, within MMP_RS02320at 437.042 kb on + strand, within MMP_RS02320at 437.097 kb on - strand, within MMP_RS02320at 437.098 kb on + strand, within MMP_RS02320at 437.483 kb on - strand, within MMP_RS02320at 437.541 kb on + strand, within MMP_RS02320at 437.586 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate with Bacitracin 15.6 uM
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434,653 + MMP_RS02305 0.55 -0.6
434,665 - MMP_RS02305 0.60 +0.0
434,679 - MMP_RS02305 0.66 -0.9
434,680 + MMP_RS02305 0.66 -0.6
434,680 + MMP_RS02305 0.66 +0.5
434,728 + MMP_RS02305 0.86 -0.0
434,803 - -1.0
434,803 - -1.4
435,312 - MMP_RS02310 0.47 +1.1
435,922 + MMP_RS02315 0.30 -0.2
436,008 + MMP_RS02315 0.39 -0.8
436,109 + MMP_RS02315 0.50 +0.0
436,278 - MMP_RS02315 0.68 -0.3
436,326 + MMP_RS02315 0.73 -1.0
436,408 + MMP_RS02315 0.81 -0.2
436,473 - MMP_RS02315 0.88 -2.2
436,491 - MMP_RS02315 0.90 -0.6
436,492 + -0.8
436,494 + +0.0
436,518 - -0.3
436,518 - +0.3
436,594 - +0.5
436,595 + -1.6
436,641 + -0.8
436,818 - MMP_RS02320 0.22 +0.8
436,818 - MMP_RS02320 0.22 +0.5
436,822 + MMP_RS02320 0.23 -0.5
436,822 + MMP_RS02320 0.23 +0.7
436,832 - MMP_RS02320 0.23 +0.1
436,925 - MMP_RS02320 0.32 +0.1
436,985 + MMP_RS02320 0.37 -0.2
437,007 - MMP_RS02320 0.39 -0.6
437,042 + MMP_RS02320 0.42 +0.6
437,097 - MMP_RS02320 0.47 -0.6
437,098 + MMP_RS02320 0.48 -0.3
437,483 - MMP_RS02320 0.82 +0.2
437,541 + MMP_RS02320 0.88 -1.2
437,586 - -1.0

Or see this region's nucleotide sequence