Strain Fitness in Pantoea sp. MT58 around IAI47_13530

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,869,211	+		IAI47_13525	0.15	+2.8
2,869,211	+		IAI47_13525	0.15	-1.1
2,869,212	-		IAI47_13525	0.15	-1.4
2,869,212	-		IAI47_13525	0.15	-2.0
2,869,344	-		IAI47_13525	0.27	-0.9
2,869,344	-		IAI47_13525	0.27	+2.5
2,869,515	-		IAI47_13525	0.41	+0.1
2,869,699	-		IAI47_13525	0.57	-1.1
2,869,699	-		IAI47_13525	0.57	+1.6
2,869,803	-		IAI47_13525	0.66	+0.8
2,869,814	+		IAI47_13525	0.67	+0.5
2,869,815	-		IAI47_13525	0.67	-0.7
2,869,815	-		IAI47_13525	0.67	-0.1
2,869,815	-		IAI47_13525	0.67	+1.2
2,869,837	+		IAI47_13525	0.69	-0.7
2,869,894	+		IAI47_13525	0.74	-2.4
2,869,894	+		IAI47_13525	0.74	-0.3
2,869,894	+		IAI47_13525	0.74	-0.5
2,869,946	-		IAI47_13525	0.79	-0.3
2,870,013	+		IAI47_13525	0.85	+0.4
2,870,044	+		IAI47_13525	0.87	+0.8
2,870,045	-		IAI47_13525	0.87	-0.1
2,870,045	-		IAI47_13525	0.87	+0.9
2,870,068	+		IAI47_13525	0.89	+1.4
2,870,068	+		IAI47_13525	0.89	+1.5
2,870,068	+		IAI47_13525	0.89	+1.5
2,870,069	-		IAI47_13525	0.89	+1.0
2,870,069	-		IAI47_13525	0.89	+0.4
2,870,069	-		IAI47_13525	0.89	+1.0
2,870,069	-		IAI47_13525	0.89	-0.8
2,870,069	-		IAI47_13525	0.89	+0.2
2,870,069	-		IAI47_13525	0.89	-1.0
2,870,069	-		IAI47_13525	0.89	+4.4
2,870,069	-		IAI47_13525	0.89	+1.5
2,870,069	-		IAI47_13525	0.89	+0.8
2,870,190	+				+1.1
2,870,190	+				+0.2
2,870,190	+				-1.3
2,870,190	+				+1.7
2,870,190	+				+0.5
2,870,191	-				+0.3
2,870,205	+				+0.2
2,870,206	-				-2.0
2,870,284	+				-0.4
2,870,284	+				+1.1
2,870,284	+				-0.1
2,870,284	+				+1.9
2,870,284	+				-0.7
2,870,284	+				+0.4
2,870,285	-				+0.3
2,870,285	-				+1.2
2,870,285	-				-0.7
2,870,285	-				-0.5
2,870,330	-		IAI47_13530	0.14	-1.2
2,870,370	+		IAI47_13530	0.18	+0.8
2,870,395	+		IAI47_13530	0.20	+1.5
2,870,396	-		IAI47_13530	0.20	+0.8
2,870,396	-		IAI47_13530	0.20	+0.2
2,870,450	+		IAI47_13530	0.25	-0.8
2,870,450	+		IAI47_13530	0.25	+0.5
2,870,450	+		IAI47_13530	0.25	+1.5
2,870,450	+		IAI47_13530	0.25	-2.0
2,870,450	+		IAI47_13530	0.25	-0.7
2,870,450	+		IAI47_13530	0.25	+1.0
2,870,450	+		IAI47_13530	0.25	-0.2
2,870,450	+		IAI47_13530	0.25	+0.3
2,870,451	-		IAI47_13530	0.25	+0.5
2,870,451	-		IAI47_13530	0.25	-0.1
2,870,451	-		IAI47_13530	0.25	-0.3
2,870,451	-		IAI47_13530	0.25	+2.1
2,870,451	-		IAI47_13530	0.25	-0.8
2,870,451	-		IAI47_13530	0.25	-1.8
2,870,451	-		IAI47_13530	0.25	+0.3
2,870,451	-		IAI47_13530	0.25	-1.1
2,870,451	-		IAI47_13530	0.25	+0.3
2,870,451	-		IAI47_13530	0.25	-0.5
2,870,451	-		IAI47_13530	0.25	-0.7
2,870,451	-		IAI47_13530	0.25	-1.5
2,870,539	+		IAI47_13530	0.34	-0.3
2,870,540	-		IAI47_13530	0.34	-3.1
2,870,540	-		IAI47_13530	0.34	-1.3
2,870,540	-		IAI47_13530	0.34	+2.4
2,870,540	-		IAI47_13530	0.34	-1.3
2,870,693	-		IAI47_13530	0.49	-0.7
2,870,701	+		IAI47_13530	0.50	+1.4
2,870,718	+		IAI47_13530	0.51	-1.1
2,870,745	+		IAI47_13530	0.54	-1.2
2,870,745	+		IAI47_13530	0.54	+0.9
2,870,745	+		IAI47_13530	0.54	-1.1
2,870,770	+		IAI47_13530	0.56	+0.2
2,870,771	-		IAI47_13530	0.56	-0.6
2,870,778	+		IAI47_13530	0.57	+1.1
2,870,778	+		IAI47_13530	0.57	-1.8
2,870,778	+		IAI47_13530	0.57	-1.0
2,870,778	+		IAI47_13530	0.57	-2.1
2,870,778	+		IAI47_13530	0.57	-0.7
2,870,778	+		IAI47_13530	0.57	-0.5
2,870,778	+		IAI47_13530	0.57	-0.4
2,870,778	+		IAI47_13530	0.57	-0.5
2,870,779	-		IAI47_13530	0.57	-2.5
2,870,779	-		IAI47_13530	0.57	+1.0
2,870,779	-		IAI47_13530	0.57	+1.2
2,870,779	-		IAI47_13530	0.57	-1.0
2,870,781	+		IAI47_13530	0.57	-0.5
2,870,781	+		IAI47_13530	0.57	-1.1
2,870,781	+		IAI47_13530	0.57	+0.3
2,870,782	-		IAI47_13530	0.57	+0.4
2,871,028	+		IAI47_13530	0.81	-3.3
2,871,029	-		IAI47_13530	0.81	+1.3
2,871,051	+		IAI47_13530	0.84	+3.6
2,871,051	+		IAI47_13530	0.84	-0.3
2,871,052	-		IAI47_13530	0.84	+1.8
2,871,052	-		IAI47_13530	0.84	+1.2
2,871,107	+		IAI47_13530	0.89	+1.5
2,871,107	+		IAI47_13530	0.89	-0.1
2,871,107	+		IAI47_13530	0.89	-0.8
2,871,108	-		IAI47_13530	0.89	+0.3
2,871,108	-		IAI47_13530	0.89	-0.2
2,871,108	-		IAI47_13530	0.89	+2.0
2,871,221	+				+0.5
2,871,221	+				-0.3
2,871,221	+				-1.6
2,871,221	+				-0.8
2,871,222	-				+2.0
2,871,222	-				+0.9
2,871,222	-				+0.5
2,871,222	-				-0.4
2,871,225	+				-0.8
2,871,225	+				+1.5
2,871,225	+				+3.1
2,871,226	-				+0.3
2,871,266	+				+0.6
2,871,266	+				-0.4
2,871,266	+				+0.6
2,871,267	-				-1.7
2,871,312	+				-1.5
2,871,313	-				+1.2
2,871,313	-				-0.4
2,871,313	-				+0.6
2,871,358	-				+0.0
2,871,358	-				+0.7
2,871,358	-				+0.0
2,871,358	-				+0.5
2,871,358	-				-0.0
2,871,370	+				+0.3
2,871,371	-				-0.3
2,871,371	-				+0.7
2,871,371	-				+2.1
2,871,458	+		IAI47_13535	0.12	-1.7
2,871,459	-		IAI47_13535	0.12	-2.0
2,871,459	-		IAI47_13535	0.12	+3.1
2,871,496	+		IAI47_13535	0.14	-0.0
2,871,496	+		IAI47_13535	0.14	+0.3
2,871,497	-		IAI47_13535	0.15	+0.8
2,871,497	-		IAI47_13535	0.15	-0.8
2,871,497	-		IAI47_13535	0.15	-0.8
2,871,498	+		IAI47_13535	0.15	+0.5
2,871,498	+		IAI47_13535	0.15	+0.2
2,871,498	+		IAI47_13535	0.15	-0.6
2,871,498	+		IAI47_13535	0.15	+2.1
2,871,498	+		IAI47_13535	0.15	+0.3
2,871,498	+		IAI47_13535	0.15	-0.1
2,871,498	+		IAI47_13535	0.15	-1.7
2,871,499	-		IAI47_13535	0.15	+0.7
2,871,499	-		IAI47_13535	0.15	+1.0
2,871,499	-		IAI47_13535	0.15	+1.5
2,871,499	-		IAI47_13535	0.15	+0.5
2,871,499	-		IAI47_13535	0.15	-1.4
2,871,698	-		IAI47_13535	0.30	+0.1
2,871,740	+		IAI47_13535	0.33	-2.7
2,871,741	-		IAI47_13535	0.33	-0.1
2,871,762	+		IAI47_13535	0.35	+0.3
2,871,763	-		IAI47_13535	0.35	-0.8
2,871,763	-		IAI47_13535	0.35	+0.9
2,871,763	-		IAI47_13535	0.35	-0.1
2,871,763	-		IAI47_13535	0.35	-0.8
2,871,823	+		IAI47_13535	0.40	-1.5
2,871,824	-		IAI47_13535	0.40	+0.0
2,871,959	+		IAI47_13535	0.50	-0.5
2,871,959	+		IAI47_13535	0.50	+0.9
2,871,959	+		IAI47_13535	0.50	+2.1
2,871,959	+		IAI47_13535	0.50	+2.1
2,871,960	-		IAI47_13535	0.50	-0.5
2,871,960	-		IAI47_13535	0.50	-0.5
2,871,962	+		IAI47_13535	0.50	+0.8
2,871,962	+		IAI47_13535	0.50	-2.3
2,871,962	+		IAI47_13535	0.50	+1.8
2,871,963	-		IAI47_13535	0.50	+1.5
2,871,963	-		IAI47_13535	0.50	+0.2
2,871,963	-		IAI47_13535	0.50	-0.5
2,871,963	-		IAI47_13535	0.50	-0.7
2,871,963	-		IAI47_13535	0.50	-0.9
2,871,963	-		IAI47_13535	0.50	+0.9
2,871,963	-		IAI47_13535	0.50	-0.4
2,871,988	+		IAI47_13535	0.52	-3.3
2,871,988	+		IAI47_13535	0.52	-1.2
2,871,988	+		IAI47_13535	0.52	+5.2
2,871,989	-		IAI47_13535	0.52	+0.0
2,871,989	-		IAI47_13535	0.52	+1.5
2,872,001	-		IAI47_13535	0.53	-1.9
2,872,034	-		IAI47_13535	0.56	-0.7
2,872,126	-		IAI47_13535	0.63	+2.5
2,872,126	-		IAI47_13535	0.63	-1.1
2,872,126	-		IAI47_13535	0.63	+1.2
2,872,127	+		IAI47_13535	0.63	+0.7
2,872,127	+		IAI47_13535	0.63	+0.5
2,872,127	+		IAI47_13535	0.63	-1.5
2,872,127	+		IAI47_13535	0.63	+2.1
2,872,127	+		IAI47_13535	0.63	+0.2
2,872,127	+		IAI47_13535	0.63	+0.9
2,872,127	+		IAI47_13535	0.63	-0.1
2,872,127	+		IAI47_13535	0.63	-1.6
2,872,127	+		IAI47_13535	0.63	-1.2
2,872,127	+		IAI47_13535	0.63	-1.3
2,872,127	+		IAI47_13535	0.63	-0.6
2,872,128	-		IAI47_13535	0.63	-0.7
2,872,128	-		IAI47_13535	0.63	+0.4
2,872,128	-		IAI47_13535	0.63	-2.7
2,872,128	-		IAI47_13535	0.63	-0.1
2,872,128	-		IAI47_13535	0.63	-1.4
2,872,128	-		IAI47_13535	0.63	+0.2
2,872,128	-		IAI47_13535	0.63	-1.7
2,872,128	-		IAI47_13535	0.63	+1.5
2,872,128	-		IAI47_13535	0.63	+0.7
2,872,128	-		IAI47_13535	0.63	-0.1
2,872,128	-		IAI47_13535	0.63	+2.3