Experiment: ALP with nitrite 0.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2804 and Dsui_2805 are separated by 40 nucleotides Dsui_2805 and Dsui_2806 are separated by 53 nucleotides
Dsui_2804: Dsui_2804 - diguanylate cyclase (GGDEF) domain-containing protein, at 2,974,941 to 2,976,557
_2804
Dsui_2805: Dsui_2805 - EamA-like transporter family, at 2,976,598 to 2,977,467
_2805
Dsui_2806: Dsui_2806 - PAS domain S-box, at 2,977,521 to 2,980,562
_2806
Position (kb)
2976
2977
2978 Strain fitness (log2 ratio)
-2
-1
0
1 at 2975.779 kb on + strand at 2975.793 kb on - strand, within Dsui_2804 at 2975.999 kb on - strand, within Dsui_2804 at 2976.163 kb on - strand, within Dsui_2804 at 2976.168 kb on - strand, within Dsui_2804 at 2976.410 kb on + strand at 2976.507 kb on + strand at 2976.537 kb on - strand at 2976.539 kb on + strand at 2976.539 kb on + strand at 2976.819 kb on - strand, within Dsui_2805 at 2976.963 kb on - strand, within Dsui_2805 at 2977.097 kb on - strand, within Dsui_2805 at 2977.433 kb on + strand at 2977.433 kb on + strand at 2977.441 kb on - strand at 2977.441 kb on - strand at 2977.451 kb on - strand at 2977.487 kb on + strand at 2977.490 kb on - strand at 2977.518 kb on - strand at 2977.567 kb on - strand at 2977.615 kb on - strand at 2977.667 kb on + strand at 2977.687 kb on - strand at 2977.736 kb on + strand at 2977.867 kb on - strand, within Dsui_2806 at 2978.097 kb on - strand, within Dsui_2806 at 2978.228 kb on + strand at 2978.234 kb on - strand, within Dsui_2806 at 2978.281 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrite 0.15 mM remove 2,975,779 + -0.3 2,975,793 - Dsui_2804 0.53 +0.2 2,975,999 - Dsui_2804 0.65 +0.3 2,976,163 - Dsui_2804 0.76 -0.0 2,976,168 - Dsui_2804 0.76 -0.1 2,976,410 + -0.3 2,976,507 + -0.3 2,976,537 - +0.1 2,976,539 + +0.7 2,976,539 + -0.3 2,976,819 - Dsui_2805 0.25 -0.9 2,976,963 - Dsui_2805 0.42 -2.5 2,977,097 - Dsui_2805 0.57 -1.5 2,977,433 + -1.6 2,977,433 + -0.3 2,977,441 - -1.3 2,977,441 - -0.3 2,977,451 - -2.3 2,977,487 + +0.7 2,977,490 - +1.7 2,977,518 - -0.5 2,977,567 - +0.7 2,977,615 - +0.7 2,977,667 + -0.3 2,977,687 - +0.7 2,977,736 + +0.7 2,977,867 - Dsui_2806 0.11 -0.9 2,978,097 - Dsui_2806 0.19 -1.3 2,978,228 + +0.7 2,978,234 - Dsui_2806 0.23 -0.3 2,978,281 - +0.7
Or see this region's nucleotide sequence