Experiment: ALP with nitrite 0.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2409 and Dsui_2410 are separated by 198 nucleotides Dsui_2410 and Dsui_2411 are separated by 121 nucleotides
Dsui_2409: Dsui_2409 - Major Facilitator Superfamily transporter, at 2,559,861 to 2,561,126
_2409
Dsui_2410: Dsui_2410 - transcriptional regulator, at 2,561,325 to 2,562,227
_2410
Dsui_2411: Dsui_2411 - alanine racemase, at 2,562,349 to 2,563,440
_2411
Position (kb)
2561
2562
2563 Strain fitness (log2 ratio)
-1
0
1 at 2561.159 kb on - strand at 2561.193 kb on - strand at 2561.200 kb on - strand at 2561.200 kb on - strand at 2561.388 kb on + strand at 2561.396 kb on + strand at 2561.401 kb on + strand at 2561.422 kb on + strand, within Dsui_2410 at 2561.519 kb on + strand, within Dsui_2410 at 2561.596 kb on + strand, within Dsui_2410 at 2561.649 kb on + strand, within Dsui_2410 at 2561.743 kb on + strand, within Dsui_2410 at 2561.743 kb on + strand, within Dsui_2410 at 2561.743 kb on + strand, within Dsui_2410 at 2561.748 kb on + strand, within Dsui_2410 at 2561.874 kb on + strand, within Dsui_2410 at 2561.923 kb on + strand, within Dsui_2410 at 2561.923 kb on + strand, within Dsui_2410 at 2561.923 kb on + strand, within Dsui_2410 at 2561.954 kb on + strand, within Dsui_2410 at 2562.011 kb on + strand, within Dsui_2410 at 2562.034 kb on + strand, within Dsui_2410 at 2562.054 kb on + strand, within Dsui_2410 at 2562.075 kb on + strand, within Dsui_2410 at 2562.107 kb on + strand, within Dsui_2410 at 2562.128 kb on + strand, within Dsui_2410 at 2562.220 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrite 0.15 mM remove 2,561,159 - -0.0 2,561,193 - +0.4 2,561,200 - +0.1 2,561,200 - +0.1 2,561,388 + -0.1 2,561,396 + -1.1 2,561,401 + -1.7 2,561,422 + Dsui_2410 0.11 +1.0 2,561,519 + Dsui_2410 0.21 +0.1 2,561,596 + Dsui_2410 0.30 +0.9 2,561,649 + Dsui_2410 0.36 -1.1 2,561,743 + Dsui_2410 0.46 -0.2 2,561,743 + Dsui_2410 0.46 -0.7 2,561,743 + Dsui_2410 0.46 -0.8 2,561,748 + Dsui_2410 0.47 +0.0 2,561,874 + Dsui_2410 0.61 -0.1 2,561,923 + Dsui_2410 0.66 -0.3 2,561,923 + Dsui_2410 0.66 -0.3 2,561,923 + Dsui_2410 0.66 -0.5 2,561,954 + Dsui_2410 0.70 -0.3 2,562,011 + Dsui_2410 0.76 +0.1 2,562,034 + Dsui_2410 0.79 +0.1 2,562,054 + Dsui_2410 0.81 -0.7 2,562,075 + Dsui_2410 0.83 -1.5 2,562,107 + Dsui_2410 0.87 +0.7 2,562,128 + Dsui_2410 0.89 -0.3 2,562,220 - +0.7
Or see this region's nucleotide sequence