Experiment: ALP with nitrite 0.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2267 and Dsui_2268 are separated by 466 nucleotides Dsui_2268 and Dsui_2269 are separated by 45 nucleotides Dsui_2269 and Dsui_2270 are separated by 280 nucleotides Dsui_2270 and Dsui_2271 are separated by 54 nucleotides
Dsui_2267: Dsui_2267 - hypothetical protein, at 2,418,914 to 2,419,648
_2267
Dsui_2268: Dsui_2268 - putative lactoylglutathione lyase, at 2,420,115 to 2,420,552
_2268
Dsui_2269: Dsui_2269 - SOS regulatory protein LexA, at 2,420,598 to 2,421,209
_2269
Dsui_2270: Dsui_2270 - hypothetical protein, at 2,421,490 to 2,421,693
_2270
Dsui_2271: Dsui_2271 - hypothetical protein, at 2,421,748 to 2,422,731
_2271
Position (kb)
2420
2421
2422 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2419.620 kb on - strand at 2419.659 kb on + strand at 2419.850 kb on - strand at 2419.855 kb on + strand at 2419.863 kb on - strand at 2419.972 kb on - strand at 2419.979 kb on - strand at 2420.007 kb on - strand at 2420.177 kb on + strand at 2420.234 kb on - strand, within Dsui_2268 at 2420.269 kb on + strand at 2420.269 kb on + strand at 2420.269 kb on + strand at 2420.277 kb on - strand, within Dsui_2268 at 2420.277 kb on - strand, within Dsui_2268 at 2420.342 kb on + strand at 2420.411 kb on + strand at 2420.424 kb on - strand, within Dsui_2268 at 2420.469 kb on + strand at 2420.530 kb on - strand at 2420.959 kb on - strand, within Dsui_2269 at 2421.207 kb on - strand at 2421.440 kb on + strand at 2421.487 kb on + strand at 2421.605 kb on - strand, within Dsui_2270 at 2421.618 kb on - strand at 2421.902 kb on - strand, within Dsui_2271 at 2422.011 kb on + strand at 2422.050 kb on + strand, within Dsui_2271 at 2422.066 kb on - strand, within Dsui_2271 at 2422.133 kb on - strand, within Dsui_2271
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrite 0.15 mM remove 2,419,620 - -1.2 2,419,659 + -0.8 2,419,850 - -0.8 2,419,855 + +0.8 2,419,863 - +0.8 2,419,972 - -1.2 2,419,979 - -0.2 2,420,007 - +0.8 2,420,177 + -1.2 2,420,234 - Dsui_2268 0.27 +1.0 2,420,269 + +0.8 2,420,269 + -0.8 2,420,269 + -0.2 2,420,277 - Dsui_2268 0.37 -1.2 2,420,277 - Dsui_2268 0.37 -0.2 2,420,342 + +0.8 2,420,411 + +0.8 2,420,424 - Dsui_2268 0.71 -2.8 2,420,469 + +0.8 2,420,530 - -2.2 2,420,959 - Dsui_2269 0.59 -1.1 2,421,207 - +0.0 2,421,440 + +0.8 2,421,487 + +0.8 2,421,605 - Dsui_2270 0.56 -0.8 2,421,618 - -0.2 2,421,902 - Dsui_2271 0.16 +0.1 2,422,011 + +0.8 2,422,050 + Dsui_2271 0.31 -1.6 2,422,066 - Dsui_2271 0.32 -0.2 2,422,133 - Dsui_2271 0.39 -0.6
Or see this region's nucleotide sequence