Experiment: ALP with nitrite 0.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2244 and Dsui_2245 are separated by 187 nucleotides Dsui_2245 and Dsui_2246 are separated by 11 nucleotides Dsui_2246 and Dsui_2247 are separated by 9 nucleotides Dsui_2247 and Dsui_2248 are separated by 40 nucleotides
Dsui_2244: Dsui_2244 - DNA mismatch repair protein MutS, at 2,390,804 to 2,393,407
_2244
Dsui_2245: Dsui_2245 - protein of unknown function (DUF1924), at 2,393,595 to 2,394,017
_2245
Dsui_2246: Dsui_2246 - Diheme cytochrome c, at 2,394,029 to 2,394,508
_2246
Dsui_2247: Dsui_2247 - cytochrome b, at 2,394,518 to 2,395,177
_2247
Dsui_2248: Dsui_2248 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 2,395,218 to 2,395,895
_2248
Position (kb)
2394
2395 Strain fitness (log2 ratio)
-1
0
1 at 2393.232 kb on - strand at 2393.232 kb on - strand at 2393.232 kb on - strand at 2393.244 kb on + strand at 2393.337 kb on - strand at 2393.354 kb on - strand at 2393.411 kb on - strand at 2393.412 kb on - strand at 2393.519 kb on + strand at 2393.685 kb on + strand at 2393.775 kb on + strand at 2393.783 kb on - strand at 2393.783 kb on - strand at 2394.067 kb on - strand at 2394.180 kb on + strand at 2394.188 kb on - strand at 2394.200 kb on - strand at 2394.277 kb on - strand at 2394.312 kb on + strand, within Dsui_2246 at 2394.438 kb on - strand at 2394.628 kb on - strand at 2394.993 kb on - strand, within Dsui_2247 at 2395.084 kb on - strand at 2395.194 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrite 0.15 mM remove 2,393,232 - +0.2 2,393,232 - -0.6 2,393,232 - +0.2 2,393,244 + +0.7 2,393,337 - +0.1 2,393,354 - -0.3 2,393,411 - -0.4 2,393,412 - -0.3 2,393,519 + +0.7 2,393,685 + +0.7 2,393,775 + +0.7 2,393,783 - +0.7 2,393,783 - +0.7 2,394,067 - -0.3 2,394,180 + +0.7 2,394,188 - -0.3 2,394,200 - +0.7 2,394,277 - -0.8 2,394,312 + Dsui_2246 0.59 -0.8 2,394,438 - +0.7 2,394,628 - +0.7 2,394,993 - Dsui_2247 0.72 +0.7 2,395,084 - +0.7 2,395,194 + +0.7
Or see this region's nucleotide sequence