Strain Fitness in Dechlorosoma suillum PS around Dsui_1778

Experiment: ALP with nitrite 0.15 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ALP with nitrite 0.15 mM
1,868,167	-		Dsui_1776	0.25	-0.1
1,868,199	+		Dsui_1776	0.29	-1.0
1,868,207	-		Dsui_1776	0.30	+0.1
1,868,207	-		Dsui_1776	0.30	+0.0
1,868,207	-		Dsui_1776	0.30	+0.4
1,868,207	-		Dsui_1776	0.30	-0.1
1,868,220	-		Dsui_1776	0.31	-0.0
1,868,326	+		Dsui_1776	0.44	-0.4
1,868,377	+		Dsui_1776	0.51	-1.0
1,868,377	+		Dsui_1776	0.51	+0.6
1,868,385	-		Dsui_1776	0.52	-0.0
1,868,434	-		Dsui_1776	0.58	+0.2
1,868,445	+		Dsui_1776	0.59	-0.0
1,868,453	-		Dsui_1776	0.60	+0.1
1,868,463	+		Dsui_1776	0.61	-1.7
1,868,488	-		Dsui_1776	0.64	-0.5
1,868,579	+		Dsui_1776	0.76	-1.4
1,868,581	-		Dsui_1776	0.76	+0.0
1,868,585	+		Dsui_1776	0.76	+0.6
1,868,588	+		Dsui_1776	0.77	+0.6
1,868,592	+		Dsui_1776	0.77	+0.6
1,868,592	+		Dsui_1776	0.77	+0.6
1,868,593	-		Dsui_1776	0.77	-0.0
1,868,600	-		Dsui_1776	0.78	-0.1
1,868,617	+		Dsui_1776	0.80	+0.6
1,868,670	-		Dsui_1776	0.87	+0.1
1,868,674	+		Dsui_1776	0.87	-0.4
1,868,674	+		Dsui_1776	0.87	-1.4
1,868,674	+		Dsui_1776	0.87	-1.4
1,868,682	-		Dsui_1776	0.88	-0.1
1,868,684	+		Dsui_1776	0.88	-2.2
1,868,692	-		Dsui_1776	0.89	-0.0
1,868,708	-				-0.6
1,868,734	+				-0.4
1,868,739	+				-0.4
1,868,740	+				-0.4
1,868,754	+				-1.0
1,868,755	-				-0.1
1,868,767	-				-0.1
1,868,769	-				-0.1
1,868,773	+				+0.6
1,868,790	+				+0.6
1,868,800	+				-2.4
1,868,801	+				+0.6
1,868,807	+				+0.6
1,868,808	+				+0.6
1,868,808	-				-0.2
1,868,810	-				-0.2
1,868,810	-				-0.3
1,868,810	-				-0.3
1,868,815	-				+0.4
1,868,828	+				+0.6
1,868,836	-				-0.2
1,868,851	-				+0.6
1,868,858	+				-0.4
1,868,858	+				-1.4
1,868,858	+				-1.0
1,868,866	-				-0.4
1,868,866	-				-2.2
1,868,866	-				-1.7
1,868,866	-				+0.6
1,868,879	-		Dsui_1777	0.11	-1.0
1,868,919	+		Dsui_1777	0.23	-1.0
1,868,951	+		Dsui_1777	0.33	-0.4
1,868,951	-		Dsui_1777	0.33	-1.0
1,868,956	-		Dsui_1777	0.35	-1.0
1,868,956	-		Dsui_1777	0.35	+0.6
1,868,970	-		Dsui_1777	0.39	+0.6
1,869,060	-		Dsui_1777	0.67	-1.7
1,869,105	-		Dsui_1777	0.81	+0.6
1,869,114	+		Dsui_1777	0.84	+0.6
1,869,182	-				-0.4
1,869,182	-				-1.4
1,869,183	+				-1.0
1,869,191	-				-0.4
1,869,222	+				-1.0
1,869,230	-				-0.4
1,869,265	+		Dsui_1778	0.10	+1.6
1,869,280	-		Dsui_1778	0.12	-2.0
1,869,346	-		Dsui_1778	0.17	+0.6
1,869,348	+		Dsui_1778	0.17	-0.4
1,869,359	-		Dsui_1778	0.18	-2.0
1,869,365	+		Dsui_1778	0.19	-1.7
1,869,439	-		Dsui_1778	0.25	-1.0
1,869,446	+		Dsui_1778	0.26	-1.4
1,869,446	+		Dsui_1778	0.26	+0.6
1,869,454	-		Dsui_1778	0.26	+0.6
1,869,454	-		Dsui_1778	0.26	+0.6
1,869,454	-		Dsui_1778	0.26	-1.0
1,869,459	-		Dsui_1778	0.27	-1.0
1,869,466	+		Dsui_1778	0.27	-0.4
1,869,473	-		Dsui_1778	0.28	-0.4
1,869,473	-		Dsui_1778	0.28	-1.4
1,869,475	-		Dsui_1778	0.28	+1.6
1,869,481	-		Dsui_1778	0.29	-2.5
1,869,490	+		Dsui_1778	0.30	+0.6
1,869,512	-		Dsui_1778	0.31	+0.6
1,869,538	-		Dsui_1778	0.34	-0.4
1,869,595	-		Dsui_1778	0.38	-2.0
1,869,605	+		Dsui_1778	0.39	+0.6
1,869,648	+		Dsui_1778	0.43	+0.6
1,869,656	-		Dsui_1778	0.44	-1.0
1,869,667	+		Dsui_1778	0.45	-0.4
1,869,678	+		Dsui_1778	0.45	-1.7
1,869,700	+		Dsui_1778	0.47	-1.0
1,869,701	-		Dsui_1778	0.47	-2.2
1,869,718	-		Dsui_1778	0.49	-1.0
1,869,743	+		Dsui_1778	0.51	-0.4
1,869,748	+		Dsui_1778	0.51	-0.4
1,869,751	-		Dsui_1778	0.52	-2.0
1,869,764	+		Dsui_1778	0.53	+0.6
1,869,764	+		Dsui_1778	0.53	-1.4
1,869,783	+		Dsui_1778	0.54	-1.0
1,869,808	+		Dsui_1778	0.56	-1.7
1,869,816	-		Dsui_1778	0.57	-0.4
1,869,816	-		Dsui_1778	0.57	-2.0
1,869,816	-		Dsui_1778	0.57	-0.7
1,869,893	-		Dsui_1778	0.64	+0.6
1,869,914	+		Dsui_1778	0.65	+0.6
1,869,922	-		Dsui_1778	0.66	-2.2
1,869,931	-		Dsui_1778	0.67	-2.0
1,869,934	+		Dsui_1778	0.67	-1.0
1,869,942	-		Dsui_1778	0.68	-1.0
1,869,942	-		Dsui_1778	0.68	-1.7
1,869,942	-		Dsui_1778	0.68	-2.2
1,869,944	-		Dsui_1778	0.68	+0.6
1,869,948	-		Dsui_1778	0.68	-2.2
1,869,956	+		Dsui_1778	0.69	-0.4
1,869,964	-		Dsui_1778	0.70	+0.6
1,869,966	-		Dsui_1778	0.70	-1.7
1,869,979	-		Dsui_1778	0.71	+0.6
1,870,045	-		Dsui_1778	0.77	-2.2
1,870,125	-		Dsui_1778	0.83	+0.0
1,870,130	+		Dsui_1778	0.84	-1.4
1,870,138	-		Dsui_1778	0.84	+0.6
1,870,151	+		Dsui_1778	0.86	-1.0
1,870,169	+		Dsui_1778	0.87	+0.6
1,870,169	+		Dsui_1778	0.87	+0.6
1,870,173	-		Dsui_1778	0.87	+1.0
1,870,223	-				-3.1
1,870,233	+				+0.6
1,870,241	-				-0.7
1,870,243	+				+0.6
1,870,256	-				-2.9
1,870,261	+				-1.0
1,870,266	+				-0.4
1,870,310	+				-0.4
1,870,313	-				-0.1
1,870,322	-				-0.1
1,870,362	+				+0.6
1,870,362	+				+0.6
1,870,366	-				-0.2
1,870,370	-				-0.4
1,870,370	-				-0.0
1,870,370	-				-0.2
1,870,370	-				-0.6
1,870,370	-				-0.5
1,870,370	-				-0.9
1,870,380	-				+0.1
1,870,426	-		Dsui_1779	0.11	-0.6
1,870,465	-		Dsui_1779	0.23	-0.4
1,870,536	-		Dsui_1779	0.44	-0.4
1,870,538	+		Dsui_1779	0.44	+0.6
1,870,538	+		Dsui_1779	0.44	-0.4
1,870,546	-		Dsui_1779	0.47	-0.1
1,870,547	+		Dsui_1779	0.47	+0.6
1,870,555	-		Dsui_1779	0.49	-0.3
1,870,556	-		Dsui_1779	0.50	-0.5
1,870,591	+		Dsui_1779	0.60	-0.4
1,870,635	+		Dsui_1779	0.73	+0.6
1,870,640	+		Dsui_1779	0.75	-1.4
1,870,643	-		Dsui_1779	0.76	-0.3
1,870,645	+		Dsui_1779	0.76	+0.6
1,870,645	+		Dsui_1779	0.76	-0.4
1,870,653	-		Dsui_1779	0.79	-0.5
1,870,653	-		Dsui_1779	0.79	+0.1
1,870,695	-				+0.2
1,870,735	-				+0.4
1,870,747	-				-0.4
1,870,766	+				+0.6
1,870,769	-				-0.3
1,870,769	-				+0.4
1,870,769	-				-0.2
1,870,817	+		Dsui_1780	0.20	-0.4
1,870,820	-		Dsui_1780	0.20	-0.2
1,870,829	+		Dsui_1780	0.23	+0.6
1,870,829	+		Dsui_1780	0.23	-0.4
1,870,837	-		Dsui_1780	0.24	-0.4
1,870,879	-		Dsui_1780	0.34	-0.4
1,870,888	+		Dsui_1780	0.36	+0.6
1,870,894	+		Dsui_1780	0.37	-0.4
1,870,904	+		Dsui_1780	0.39	-0.4
1,870,904	+		Dsui_1780	0.39	+0.6
1,870,917	-		Dsui_1780	0.42	-0.6
1,870,918	-		Dsui_1780	0.43	-0.8
1,870,919	-		Dsui_1780	0.43	-0.3
1,870,939	+		Dsui_1780	0.47	-2.0
1,870,939	+		Dsui_1780	0.47	+0.6
1,870,947	-		Dsui_1780	0.49	+0.1
1,870,964	-		Dsui_1780	0.53	-0.3
1,870,965	-		Dsui_1780	0.53	-0.5
1,871,024	+		Dsui_1780	0.66	-0.4
1,871,047	-		Dsui_1780	0.72	-0.1
1,871,105	+		Dsui_1780	0.85	-1.7
1,871,108	-		Dsui_1780	0.85	-1.3
1,871,132	+				-1.0
1,871,132	+				-1.7
1,871,134	-				-1.1
1,871,140	-				-1.1
1,871,151	+				-1.0
1,871,152	-				-1.1
1,871,152	-				-1.4
1,871,152	-				-0.2
1,871,201	+				+0.6
1,871,216	-				-0.4
1,871,230	+				-1.4
1,871,230	+				-1.4
1,871,233	-				-0.4
1,871,238	-				-1.7
1,871,248	+				-0.4
1,871,248	-				-0.4
1,871,248	-				+0.6
1,871,248	-				-0.4
1,871,283	+				-0.4
1,871,302	+				-1.7