Strain Fitness in Dechlorosoma suillum PS around Dsui_1184

Experiment: ALP with nitrite 0.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1182 and Dsui_1183 overlap by 4 nucleotidesDsui_1183 and Dsui_1184 are separated by 120 nucleotidesDsui_1184 and Dsui_1185 are separated by 39 nucleotidesDsui_1185 and Dsui_1186 are separated by 12 nucleotides Dsui_1182: Dsui_1182 - diaminopimelate decarboxylase, at 1,235,606 to 1,236,862 _1182 Dsui_1183: Dsui_1183 - hypothetical protein, at 1,236,859 to 1,237,032 _1183 Dsui_1184: Dsui_1184 - iron donor protein CyaY, at 1,237,153 to 1,237,470 _1184 Dsui_1185: Dsui_1185 - hypothetical protein involved in intracellular sulfur reduction, at 1,237,510 to 1,237,866 _1185 Dsui_1186: Dsui_1186 - penicillin-binding protein, 1A family, at 1,237,879 to 1,240,194 _1186 Position (kb) 1237 1238Strain fitness (log2 ratio) -3 -2 -1 0 1at 1237.078 kb on - strandat 1237.104 kb on + strandat 1237.112 kb on - strandat 1237.116 kb on + strandat 1237.123 kb on - strandat 1237.124 kb on - strandat 1237.124 kb on - strandat 1237.124 kb on - strandat 1237.462 kb on - strandat 1237.493 kb on - strandat 1237.517 kb on + strandat 1237.525 kb on - strandat 1237.541 kb on - strandat 1237.552 kb on - strand, within Dsui_1185at 1237.615 kb on - strand, within Dsui_1185at 1237.615 kb on - strand, within Dsui_1185at 1237.615 kb on - strand, within Dsui_1185at 1237.852 kb on + strandat 1237.962 kb on - strandat 1237.970 kb on + strandat 1237.970 kb on + strandat 1237.992 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrite 0.15 mM
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1,237,078 - -0.3
1,237,104 + -0.9
1,237,112 - -3.0
1,237,116 + -0.4
1,237,123 - +0.8
1,237,124 - -1.8
1,237,124 - -0.8
1,237,124 - +0.3
1,237,462 - -0.0
1,237,493 - -0.3
1,237,517 + -0.9
1,237,525 - +0.4
1,237,541 - -0.3
1,237,552 - Dsui_1185 0.12 +0.0
1,237,615 - Dsui_1185 0.29 -0.2
1,237,615 - Dsui_1185 0.29 +0.3
1,237,615 - Dsui_1185 0.29 -0.4
1,237,852 + -0.7
1,237,962 - -0.3
1,237,970 + -1.1
1,237,970 + -2.8
1,237,992 + -1.1

Or see this region's nucleotide sequence