Strain Fitness in Dechlorosoma suillum PS around Dsui_0590

Experiment: ALP with nitrite 0.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0589 and Dsui_0590 are separated by 8 nucleotidesDsui_0590 and Dsui_0591 are separated by 91 nucleotides Dsui_0589: Dsui_0589 - putative GTPase, G3E family, at 586,512 to 587,507 _0589 Dsui_0590: Dsui_0590 - Fe2+/Zn2+ uptake regulation protein, at 587,516 to 587,956 _0590 Dsui_0591: Dsui_0591 - deoxyribodipyrimidine photolyase, at 588,048 to 589,496 _0591 Position (kb) 587 588Strain fitness (log2 ratio) -2 -1 0 1at 586.576 kb on - strandat 586.615 kb on + strandat 586.623 kb on - strand, within Dsui_0589at 586.631 kb on + strand, within Dsui_0589at 586.700 kb on + strand, within Dsui_0589at 586.734 kb on - strand, within Dsui_0589at 586.734 kb on - strand, within Dsui_0589at 586.818 kb on + strand, within Dsui_0589at 586.821 kb on + strand, within Dsui_0589at 586.882 kb on - strand, within Dsui_0589at 587.025 kb on - strand, within Dsui_0589at 587.109 kb on - strand, within Dsui_0589at 587.119 kb on - strand, within Dsui_0589at 587.144 kb on - strand, within Dsui_0589at 587.166 kb on + strandat 587.203 kb on + strand, within Dsui_0589at 587.280 kb on - strand, within Dsui_0589at 587.301 kb on - strand, within Dsui_0589at 587.366 kb on - strand, within Dsui_0589at 587.431 kb on - strandat 587.500 kb on - strandat 587.540 kb on - strandat 587.596 kb on + strand, within Dsui_0590at 588.073 kb on + strandat 588.121 kb on + strandat 588.137 kb on - strandat 588.198 kb on + strandat 588.216 kb on - strand, within Dsui_0591at 588.504 kb on - strand, within Dsui_0591at 588.650 kb on - strand, within Dsui_0591at 588.675 kb on - strand, within Dsui_0591at 588.764 kb on + strand, within Dsui_0591at 588.764 kb on + strand, within Dsui_0591at 588.764 kb on + strand, within Dsui_0591at 588.794 kb on - strand, within Dsui_0591at 588.892 kb on + strandat 588.892 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrite 0.15 mM
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586,576 - +0.3
586,615 + -0.5
586,623 - Dsui_0589 0.11 -0.1
586,631 + Dsui_0589 0.12 +0.5
586,700 + Dsui_0589 0.19 -0.5
586,734 - Dsui_0589 0.22 -0.2
586,734 - Dsui_0589 0.22 -0.5
586,818 + Dsui_0589 0.31 -0.5
586,821 + Dsui_0589 0.31 -0.5
586,882 - Dsui_0589 0.37 -0.5
587,025 - Dsui_0589 0.52 -1.7
587,109 - Dsui_0589 0.60 -1.1
587,119 - Dsui_0589 0.61 -0.7
587,144 - Dsui_0589 0.63 -1.5
587,166 + +0.5
587,203 + Dsui_0589 0.69 +0.5
587,280 - Dsui_0589 0.77 -0.7
587,301 - Dsui_0589 0.79 -0.8
587,366 - Dsui_0589 0.86 -0.4
587,431 - +0.6
587,500 - -0.6
587,540 - -0.4
587,596 + Dsui_0590 0.18 +0.5
588,073 + -0.5
588,121 + -0.5
588,137 - -0.9
588,198 + +0.5
588,216 - Dsui_0591 0.12 +0.5
588,504 - Dsui_0591 0.31 -0.4
588,650 - Dsui_0591 0.42 -0.2
588,675 - Dsui_0591 0.43 -0.5
588,764 + Dsui_0591 0.49 -1.1
588,764 + Dsui_0591 0.49 -1.1
588,764 + Dsui_0591 0.49 -1.9
588,794 - Dsui_0591 0.51 -0.0
588,892 + +0.5
588,892 + -0.5

Or see this region's nucleotide sequence