Strain Fitness in Dechlorosoma suillum PS around Dsui_0381

Experiment: ALP with nitrite 0.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0380 and Dsui_0381 are separated by 40 nucleotidesDsui_0381 and Dsui_0382 are separated by 1 nucleotidesDsui_0382 and Dsui_0383 are separated by 123 nucleotides Dsui_0380: Dsui_0380 - hypothetical protein, at 379,820 to 380,632 _0380 Dsui_0381: Dsui_0381 - signal transduction histidine kinase, at 380,673 to 382,576 _0381 Dsui_0382: Dsui_0382 - response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 382,578 to 383,228 _0382 Dsui_0383: Dsui_0383 - hypothetical protein, at 383,352 to 383,864 _0383 Position (kb) 380 381 382 383Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 379.690 kb on + strandat 379.704 kb on + strandat 379.773 kb on + strandat 379.884 kb on - strandat 379.893 kb on + strandat 379.942 kb on - strand, within Dsui_0380at 379.993 kb on - strandat 380.003 kb on + strand, within Dsui_0380at 380.021 kb on + strand, within Dsui_0380at 380.021 kb on + strand, within Dsui_0380at 380.021 kb on + strand, within Dsui_0380at 380.021 kb on + strand, within Dsui_0380at 380.021 kb on + strand, within Dsui_0380at 380.029 kb on - strandat 380.029 kb on - strand, within Dsui_0380at 380.029 kb on - strandat 380.029 kb on - strand, within Dsui_0380at 380.245 kb on - strand, within Dsui_0380at 380.389 kb on + strand, within Dsui_0380at 380.397 kb on - strand, within Dsui_0380at 380.414 kb on + strand, within Dsui_0380at 380.494 kb on - strand, within Dsui_0380at 380.551 kb on + strandat 380.846 kb on - strandat 380.901 kb on + strand, within Dsui_0381at 380.989 kb on - strandat 380.989 kb on - strand, within Dsui_0381at 381.208 kb on + strand, within Dsui_0381at 381.216 kb on - strand, within Dsui_0381at 381.241 kb on + strand, within Dsui_0381at 381.296 kb on + strand, within Dsui_0381at 381.386 kb on - strand, within Dsui_0381at 381.407 kb on - strand, within Dsui_0381at 381.425 kb on - strand, within Dsui_0381at 381.476 kb on + strand, within Dsui_0381at 381.546 kb on + strand, within Dsui_0381at 381.556 kb on + strand, within Dsui_0381at 381.556 kb on + strand, within Dsui_0381at 381.564 kb on - strand, within Dsui_0381at 381.564 kb on - strandat 381.564 kb on - strand, within Dsui_0381at 381.634 kb on + strand, within Dsui_0381at 381.649 kb on + strand, within Dsui_0381at 381.657 kb on - strand, within Dsui_0381at 381.671 kb on + strand, within Dsui_0381at 381.679 kb on - strand, within Dsui_0381at 381.679 kb on - strand, within Dsui_0381at 381.693 kb on - strand, within Dsui_0381at 381.871 kb on - strandat 381.881 kb on + strandat 381.881 kb on + strand, within Dsui_0381at 381.946 kb on + strandat 381.972 kb on + strand, within Dsui_0381at 382.031 kb on + strand, within Dsui_0381at 382.036 kb on + strand, within Dsui_0381at 382.039 kb on - strand, within Dsui_0381at 382.078 kb on + strand, within Dsui_0381at 382.156 kb on - strand, within Dsui_0381at 382.417 kb on - strandat 382.485 kb on + strandat 382.493 kb on - strandat 382.584 kb on - strandat 382.607 kb on - strandat 382.613 kb on + strandat 382.642 kb on - strandat 382.720 kb on - strand, within Dsui_0382at 382.725 kb on - strand, within Dsui_0382at 382.745 kb on + strand, within Dsui_0382at 382.906 kb on + strand, within Dsui_0382at 382.914 kb on - strand, within Dsui_0382at 382.958 kb on + strand, within Dsui_0382at 382.965 kb on + strand, within Dsui_0382at 383.032 kb on - strand, within Dsui_0382at 383.032 kb on - strand, within Dsui_0382at 383.139 kb on - strand, within Dsui_0382at 383.175 kb on + strandat 383.175 kb on + strandat 383.183 kb on - strandat 383.183 kb on - strandat 383.238 kb on - strandat 383.271 kb on - strandat 383.281 kb on - strandat 383.321 kb on - strandat 383.350 kb on + strandat 383.354 kb on - strandat 383.358 kb on - strandat 383.413 kb on - strandat 383.432 kb on - strand, within Dsui_0383at 383.440 kb on + strand, within Dsui_0383at 383.528 kb on + strand, within Dsui_0383at 383.543 kb on + strand, within Dsui_0383at 383.573 kb on - strand, within Dsui_0383

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrite 0.15 mM
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379,690 + +0.6
379,704 + +0.6
379,773 + -1.4
379,884 - +0.6
379,893 + -1.4
379,942 - Dsui_0380 0.15 -1.7
379,993 - +0.6
380,003 + Dsui_0380 0.23 -1.7
380,021 + Dsui_0380 0.25 +0.3
380,021 + Dsui_0380 0.25 -0.4
380,021 + Dsui_0380 0.25 -0.2
380,021 + Dsui_0380 0.25 -0.8
380,021 + Dsui_0380 0.25 +0.3
380,029 - +0.6
380,029 - Dsui_0380 0.26 -0.6
380,029 - +0.6
380,029 - Dsui_0380 0.26 -1.0
380,245 - Dsui_0380 0.52 -1.4
380,389 + Dsui_0380 0.70 +0.6
380,397 - Dsui_0380 0.71 -1.0
380,414 + Dsui_0380 0.73 +2.2
380,494 - Dsui_0380 0.83 -1.4
380,551 + +0.9
380,846 - -2.4
380,901 + Dsui_0381 0.12 -0.7
380,989 - -1.0
380,989 - Dsui_0381 0.17 -2.0
381,208 + Dsui_0381 0.28 -0.3
381,216 - Dsui_0381 0.29 +0.6
381,241 + Dsui_0381 0.30 +0.6
381,296 + Dsui_0381 0.33 -0.8
381,386 - Dsui_0381 0.37 -2.0
381,407 - Dsui_0381 0.39 +0.6
381,425 - Dsui_0381 0.39 -1.0
381,476 + Dsui_0381 0.42 -0.0
381,546 + Dsui_0381 0.46 +0.3
381,556 + Dsui_0381 0.46 -1.8
381,556 + Dsui_0381 0.46 +0.9
381,564 - Dsui_0381 0.47 -0.4
381,564 - -1.0
381,564 - Dsui_0381 0.47 -0.4
381,634 + Dsui_0381 0.50 -0.3
381,649 + Dsui_0381 0.51 -0.2
381,657 - Dsui_0381 0.52 +0.6
381,671 + Dsui_0381 0.52 -1.0
381,679 - Dsui_0381 0.53 -0.4
381,679 - Dsui_0381 0.53 -2.2
381,693 - Dsui_0381 0.54 -1.7
381,871 - -0.4
381,881 + -0.4
381,881 + Dsui_0381 0.63 -1.4
381,946 + -1.0
381,972 + Dsui_0381 0.68 -1.7
382,031 + Dsui_0381 0.71 -1.0
382,036 + Dsui_0381 0.72 +0.2
382,039 - Dsui_0381 0.72 +0.6
382,078 + Dsui_0381 0.74 -1.7
382,156 - Dsui_0381 0.78 -3.6
382,417 - +0.6
382,485 + -0.4
382,493 - +0.6
382,584 - -0.3
382,607 - -0.2
382,613 + -2.0
382,642 - -0.8
382,720 - Dsui_0382 0.22 -1.1
382,725 - Dsui_0382 0.23 -0.4
382,745 + Dsui_0382 0.26 +1.2
382,906 + Dsui_0382 0.50 -1.0
382,914 - Dsui_0382 0.52 -0.4
382,958 + Dsui_0382 0.58 -1.0
382,965 + Dsui_0382 0.59 +0.6
383,032 - Dsui_0382 0.70 -0.0
383,032 - Dsui_0382 0.70 -0.2
383,139 - Dsui_0382 0.86 -0.7
383,175 + +0.6
383,175 + -2.2
383,183 - -0.2
383,183 - -0.3
383,238 - -0.4
383,271 - +0.6
383,281 - -0.4
383,321 - -0.4
383,350 + +0.4
383,354 - +0.6
383,358 - -2.2
383,413 - -0.4
383,432 - Dsui_0383 0.16 +0.6
383,440 + Dsui_0383 0.17 -1.0
383,528 + Dsui_0383 0.34 -1.4
383,543 + Dsui_0383 0.37 -1.9
383,573 - Dsui_0383 0.43 -0.4

Or see this region's nucleotide sequence