Experiment: ALP with nitrite 0.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0296 and Dsui_0297 are separated by 250 nucleotides Dsui_0297 and Dsui_0298 are separated by 64 nucleotides
Dsui_0296: Dsui_0296 - hypothetical protein, at 297,726 to 298,508
_0296
Dsui_0297: Dsui_0297 - sugar fermentation stimulation protein, at 298,759 to 299,478
_0297
Dsui_0298: Dsui_0298 - Kef-type K+ ransport system, predicted NAD-binding component, at 299,543 to 300,421
_0298
Position (kb) 298
299
300 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 297.767 kb on + strand at 297.801 kb on + strand at 297.868 kb on - strand at 297.879 kb on + strand, within Dsui_0296 at 298.136 kb on - strand at 298.141 kb on - strand, within Dsui_0296 at 298.146 kb on - strand, within Dsui_0296 at 298.416 kb on - strand at 298.452 kb on + strand at 298.517 kb on + strand at 298.830 kb on - strand at 298.860 kb on + strand, within Dsui_0297 at 298.860 kb on + strand at 298.938 kb on - strand, within Dsui_0297 at 298.960 kb on - strand, within Dsui_0297 at 298.960 kb on - strand, within Dsui_0297 at 298.986 kb on + strand at 298.991 kb on - strand, within Dsui_0297 at 299.249 kb on + strand, within Dsui_0297 at 299.284 kb on + strand, within Dsui_0297 at 299.346 kb on - strand at 299.369 kb on + strand at 299.409 kb on + strand at 299.464 kb on - strand at 299.554 kb on - strand at 299.715 kb on - strand, within Dsui_0298 at 299.772 kb on + strand, within Dsui_0298 at 299.796 kb on - strand, within Dsui_0298 at 299.890 kb on - strand, within Dsui_0298 at 299.896 kb on - strand, within Dsui_0298 at 299.960 kb on - strand, within Dsui_0298 at 299.980 kb on + strand at 299.999 kb on - strand, within Dsui_0298 at 300.001 kb on + strand, within Dsui_0298 at 300.001 kb on + strand, within Dsui_0298 at 300.027 kb on - strand, within Dsui_0298 at 300.098 kb on - strand, within Dsui_0298 at 300.149 kb on + strand, within Dsui_0298 at 300.149 kb on + strand at 300.152 kb on - strand, within Dsui_0298 at 300.174 kb on + strand at 300.182 kb on - strand, within Dsui_0298 at 300.237 kb on - strand, within Dsui_0298 at 300.243 kb on - strand, within Dsui_0298 at 300.272 kb on + strand, within Dsui_0298
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrite 0.15 mM remove 297,767 + -0.4 297,801 + -1.0 297,868 - -0.4 297,879 + Dsui_0296 0.20 -2.0 298,136 - -0.4 298,141 - Dsui_0296 0.53 -1.7 298,146 - Dsui_0296 0.54 -0.4 298,416 - +0.6 298,452 + -1.7 298,517 + -1.7 298,830 - +0.6 298,860 + Dsui_0297 0.14 -1.4 298,860 + +0.6 298,938 - Dsui_0297 0.25 -2.4 298,960 - Dsui_0297 0.28 -0.4 298,960 - Dsui_0297 0.28 -1.7 298,986 + +0.6 298,991 - Dsui_0297 0.32 -2.9 299,249 + Dsui_0297 0.68 -1.0 299,284 + Dsui_0297 0.73 -1.0 299,346 - +0.6 299,369 + -0.4 299,409 + +0.6 299,464 - -0.4 299,554 - +0.0 299,715 - Dsui_0298 0.20 +0.2 299,772 + Dsui_0298 0.26 -1.0 299,796 - Dsui_0298 0.29 -1.1 299,890 - Dsui_0298 0.39 -0.8 299,896 - Dsui_0298 0.40 +0.3 299,960 - Dsui_0298 0.47 -0.9 299,980 + +0.6 299,999 - Dsui_0298 0.52 -1.2 300,001 + Dsui_0298 0.52 +0.6 300,001 + Dsui_0298 0.52 +0.6 300,027 - Dsui_0298 0.55 -0.9 300,098 - Dsui_0298 0.63 +0.0 300,149 + Dsui_0298 0.69 -2.2 300,149 + +0.6 300,152 - Dsui_0298 0.69 -0.2 300,174 + +0.6 300,182 - Dsui_0298 0.73 +0.2 300,237 - Dsui_0298 0.79 -1.5 300,243 - Dsui_0298 0.80 -0.0 300,272 + Dsui_0298 0.83 -1.0
Or see this region's nucleotide sequence