Experiment: D-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS25985 and BWI76_RS25990 are separated by 157 nucleotides BWI76_RS25990 and BWI76_RS25995 are separated by 51 nucleotides BWI76_RS25995 and BWI76_RS26000 overlap by 11 nucleotides
BWI76_RS25980: BWI76_RS25980 - hypothetical protein, at 5,370,386 to 5,370,790
_RS25980
BWI76_RS25985: BWI76_RS25985 - hypothetical protein, at 5,370,750 to 5,370,937
_RS25985
BWI76_RS25990: BWI76_RS25990 - cAMP-activated global transcriptional regulator CRP, at 5,371,095 to 5,371,727
_RS25990
BWI76_RS25995: BWI76_RS25995 - membrane protein, at 5,371,779 to 5,373,857
_RS25995
BWI76_RS26000: BWI76_RS26000 - aspartate aminotransferase family protein, at 5,373,847 to 5,375,067
_RS26000
Position (kb) 5371
5372
5373
5374 Strain fitness (log2 ratio) -2
-1
0
1 at 5370.968 kb on + strand at 5370.971 kb on - strand at 5370.992 kb on + strand at 5371.814 kb on - strand at 5371.890 kb on + strand at 5372.219 kb on + strand, within BWI76_RS25995 at 5372.276 kb on - strand, within BWI76_RS25995 at 5372.310 kb on + strand, within BWI76_RS25995 at 5372.400 kb on + strand, within BWI76_RS25995 at 5372.530 kb on - strand, within BWI76_RS25995 at 5372.598 kb on - strand, within BWI76_RS25995 at 5372.885 kb on + strand, within BWI76_RS25995 at 5372.890 kb on + strand, within BWI76_RS25995 at 5372.890 kb on + strand, within BWI76_RS25995 at 5372.921 kb on - strand, within BWI76_RS25995 at 5372.936 kb on + strand, within BWI76_RS25995 at 5372.944 kb on - strand, within BWI76_RS25995 at 5373.073 kb on - strand, within BWI76_RS25995 at 5373.086 kb on - strand, within BWI76_RS25995 at 5373.093 kb on - strand, within BWI76_RS25995 at 5373.105 kb on - strand, within BWI76_RS25995 at 5373.110 kb on - strand, within BWI76_RS25995 at 5373.159 kb on - strand, within BWI76_RS25995 at 5373.174 kb on - strand, within BWI76_RS25995 at 5373.183 kb on + strand, within BWI76_RS25995 at 5373.372 kb on - strand, within BWI76_RS25995 at 5373.545 kb on + strand, within BWI76_RS25995 at 5373.553 kb on - strand, within BWI76_RS25995 at 5373.569 kb on - strand, within BWI76_RS25995 at 5373.618 kb on - strand, within BWI76_RS25995 at 5373.930 kb on + strand at 5373.948 kb on - strand at 5374.067 kb on + strand, within BWI76_RS26000 at 5374.262 kb on + strand, within BWI76_RS26000 at 5374.302 kb on + strand, within BWI76_RS26000 at 5374.312 kb on + strand, within BWI76_RS26000 at 5374.312 kb on + strand, within BWI76_RS26000 at 5374.315 kb on - strand, within BWI76_RS26000 at 5374.396 kb on + strand, within BWI76_RS26000 at 5374.418 kb on - strand, within BWI76_RS26000 at 5374.475 kb on - strand, within BWI76_RS26000 at 5374.649 kb on + strand, within BWI76_RS26000 at 5374.823 kb on - strand, within BWI76_RS26000
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (C) remove 5,370,968 + -2.0 5,370,971 - -2.5 5,370,992 + -1.7 5,371,814 - -0.1 5,371,890 + -0.1 5,372,219 + BWI76_RS25995 0.21 -0.2 5,372,276 - BWI76_RS25995 0.24 +0.5 5,372,310 + BWI76_RS25995 0.26 -0.2 5,372,400 + BWI76_RS25995 0.30 +0.6 5,372,530 - BWI76_RS25995 0.36 +1.6 5,372,598 - BWI76_RS25995 0.39 +0.4 5,372,885 + BWI76_RS25995 0.53 +0.2 5,372,890 + BWI76_RS25995 0.53 +0.3 5,372,890 + BWI76_RS25995 0.53 -0.7 5,372,921 - BWI76_RS25995 0.55 +1.2 5,372,936 + BWI76_RS25995 0.56 +0.3 5,372,944 - BWI76_RS25995 0.56 +0.8 5,373,073 - BWI76_RS25995 0.62 +1.1 5,373,086 - BWI76_RS25995 0.63 +0.2 5,373,093 - BWI76_RS25995 0.63 +0.3 5,373,105 - BWI76_RS25995 0.64 -0.1 5,373,110 - BWI76_RS25995 0.64 +1.1 5,373,159 - BWI76_RS25995 0.66 -0.2 5,373,174 - BWI76_RS25995 0.67 -0.0 5,373,183 + BWI76_RS25995 0.68 +0.1 5,373,372 - BWI76_RS25995 0.77 -0.5 5,373,545 + BWI76_RS25995 0.85 -1.1 5,373,553 - BWI76_RS25995 0.85 -1.4 5,373,569 - BWI76_RS25995 0.86 -0.2 5,373,618 - BWI76_RS25995 0.88 +1.6 5,373,930 + +1.1 5,373,948 - +0.3 5,374,067 + BWI76_RS26000 0.18 -0.1 5,374,262 + BWI76_RS26000 0.34 -0.6 5,374,302 + BWI76_RS26000 0.37 -0.4 5,374,312 + BWI76_RS26000 0.38 -2.2 5,374,312 + BWI76_RS26000 0.38 -1.1 5,374,315 - BWI76_RS26000 0.38 -1.7 5,374,396 + BWI76_RS26000 0.45 -1.6 5,374,418 - BWI76_RS26000 0.47 -1.8 5,374,475 - BWI76_RS26000 0.51 -0.7 5,374,649 + BWI76_RS26000 0.66 +1.6 5,374,823 - BWI76_RS26000 0.80 -0.8
Or see this region's nucleotide sequence