Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19970

Experiment: D-Alanine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS19965 and BWI76_RS19970 overlap by 11 nucleotidesBWI76_RS19970 and BWI76_RS19975 overlap by 4 nucleotides BWI76_RS19965: BWI76_RS19965 - sn-glycerol-3-phosphate dehydrogenase subunit A, at 4,181,729 to 4,183,351 _RS19965 BWI76_RS19970: BWI76_RS19970 - anaerobic glycerol-3-phosphate dehydrogenase subunit B, at 4,183,341 to 4,184,600 _RS19970 BWI76_RS19975: BWI76_RS19975 - sn-glycerol-3-phosphate dehydrogenase subunit C, at 4,184,597 to 4,185,776 _RS19975 Position (kb) 4183 4184 4185Strain fitness (log2 ratio) -1 0 1at 4182.391 kb on - strand, within BWI76_RS19965at 4183.052 kb on + strand, within BWI76_RS19965at 4183.305 kb on + strandat 4183.393 kb on + strandat 4183.402 kb on - strandat 4183.647 kb on - strand, within BWI76_RS19970at 4183.655 kb on + strand, within BWI76_RS19970at 4184.257 kb on + strand, within BWI76_RS19970at 4184.594 kb on + strandat 4184.825 kb on - strand, within BWI76_RS19975at 4185.312 kb on + strand, within BWI76_RS19975at 4185.313 kb on - strandat 4185.319 kb on + strand, within BWI76_RS19975at 4185.319 kb on + strand, within BWI76_RS19975at 4185.327 kb on - strandat 4185.327 kb on - strand, within BWI76_RS19975at 4185.327 kb on - strand, within BWI76_RS19975at 4185.327 kb on - strand, within BWI76_RS19975at 4185.522 kb on - strand, within BWI76_RS19975

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (C)
remove
4,182,391 - BWI76_RS19965 0.41 -0.1
4,183,052 + BWI76_RS19965 0.82 +0.1
4,183,305 + -0.9
4,183,393 + +0.0
4,183,402 - +0.0
4,183,647 - BWI76_RS19970 0.24 -1.3
4,183,655 + BWI76_RS19970 0.25 -0.4
4,184,257 + BWI76_RS19970 0.73 -0.5
4,184,594 + +0.5
4,184,825 - BWI76_RS19975 0.19 +0.4
4,185,312 + BWI76_RS19975 0.61 +0.0
4,185,313 - +1.5
4,185,319 + BWI76_RS19975 0.61 +1.7
4,185,319 + BWI76_RS19975 0.61 -0.0
4,185,327 - +1.5
4,185,327 - BWI76_RS19975 0.62 -0.2
4,185,327 - BWI76_RS19975 0.62 +0.2
4,185,327 - BWI76_RS19975 0.62 +0.4
4,185,522 - BWI76_RS19975 0.78 -0.2

Or see this region's nucleotide sequence