Experiment: D-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03070 and BWI76_RS03075 are separated by 18 nucleotides BWI76_RS03075 and BWI76_RS03080 are separated by 196 nucleotides
BWI76_RS03070: BWI76_RS03070 - Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) <small>(from data)</small>, at 629,200 to 630,705
_RS03070
BWI76_RS03075: BWI76_RS03075 - 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) <small>(from data)</small>, at 630,724 to 631,533
_RS03075
BWI76_RS03080: BWI76_RS03080 - (Fe-S)-cluster assembly protein, at 631,730 to 632,587
_RS03080
Position (kb) 630
631
632 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 629.832 kb on + strand, within BWI76_RS03070 at 629.837 kb on + strand, within BWI76_RS03070 at 629.840 kb on - strand, within BWI76_RS03070 at 629.845 kb on - strand, within BWI76_RS03070 at 629.947 kb on + strand, within BWI76_RS03070 at 630.110 kb on - strand, within BWI76_RS03070 at 630.152 kb on + strand, within BWI76_RS03070 at 630.239 kb on + strand, within BWI76_RS03070 at 630.394 kb on + strand, within BWI76_RS03070 at 630.516 kb on + strand, within BWI76_RS03070 at 630.517 kb on - strand, within BWI76_RS03070 at 630.819 kb on - strand, within BWI76_RS03075 at 630.869 kb on + strand, within BWI76_RS03075 at 630.899 kb on - strand, within BWI76_RS03075 at 630.926 kb on + strand, within BWI76_RS03075 at 630.990 kb on + strand, within BWI76_RS03075 at 630.990 kb on + strand, within BWI76_RS03075 at 630.998 kb on - strand, within BWI76_RS03075 at 631.193 kb on - strand, within BWI76_RS03075 at 631.350 kb on + strand, within BWI76_RS03075 at 631.367 kb on + strand, within BWI76_RS03075 at 631.471 kb on + strand at 631.508 kb on + strand at 631.639 kb on - strand at 631.711 kb on + strand at 631.852 kb on + strand, within BWI76_RS03080 at 631.860 kb on - strand, within BWI76_RS03080 at 631.932 kb on + strand, within BWI76_RS03080 at 632.081 kb on - strand, within BWI76_RS03080 at 632.086 kb on - strand, within BWI76_RS03080 at 632.231 kb on - strand, within BWI76_RS03080
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (C) remove 629,832 + BWI76_RS03070 0.42 +1.7 629,837 + BWI76_RS03070 0.42 -0.7 629,840 - BWI76_RS03070 0.42 -0.4 629,845 - BWI76_RS03070 0.43 +1.1 629,947 + BWI76_RS03070 0.50 +0.1 630,110 - BWI76_RS03070 0.60 +2.0 630,152 + BWI76_RS03070 0.63 -1.9 630,239 + BWI76_RS03070 0.69 +0.6 630,394 + BWI76_RS03070 0.79 +0.3 630,516 + BWI76_RS03070 0.87 -0.5 630,517 - BWI76_RS03070 0.87 -0.0 630,819 - BWI76_RS03075 0.12 -0.1 630,869 + BWI76_RS03075 0.18 +0.9 630,899 - BWI76_RS03075 0.22 -0.9 630,926 + BWI76_RS03075 0.25 +2.3 630,990 + BWI76_RS03075 0.33 +0.6 630,990 + BWI76_RS03075 0.33 +0.0 630,998 - BWI76_RS03075 0.34 -0.2 631,193 - BWI76_RS03075 0.58 +0.7 631,350 + BWI76_RS03075 0.77 +2.9 631,367 + BWI76_RS03075 0.79 -0.7 631,471 + +0.6 631,508 + +0.3 631,639 - -0.3 631,711 + +0.3 631,852 + BWI76_RS03080 0.14 -1.7 631,860 - BWI76_RS03080 0.15 -2.1 631,932 + BWI76_RS03080 0.24 -2.5 632,081 - BWI76_RS03080 0.41 -4.5 632,086 - BWI76_RS03080 0.41 -0.9 632,231 - BWI76_RS03080 0.58 -1.6
Or see this region's nucleotide sequence