Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_20355

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_20350 and AO353_20355 are separated by 251 nucleotidesAO353_20355 and AO353_20360 are separated by 49 nucleotides AO353_20350: AO353_20350 - Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data), at 4,473,150 to 4,474,313 _20350 AO353_20355: AO353_20355 - AMP-binding protein, at 4,474,565 to 4,476,262 _20355 AO353_20360: AO353_20360 - MFS transporter, at 4,476,312 to 4,477,373 _20360 Position (kb) 4474 4475 4476 4477Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4473.577 kb on + strand, within AO353_20350at 4473.578 kb on - strand, within AO353_20350at 4473.793 kb on + strand, within AO353_20350at 4473.793 kb on + strand, within AO353_20350at 4473.794 kb on - strand, within AO353_20350at 4473.802 kb on + strand, within AO353_20350at 4473.802 kb on + strand, within AO353_20350at 4473.802 kb on + strand, within AO353_20350at 4473.802 kb on + strand, within AO353_20350at 4473.802 kb on + strand, within AO353_20350at 4473.802 kb on + strand, within AO353_20350at 4473.802 kb on + strand, within AO353_20350at 4473.802 kb on + strand, within AO353_20350at 4473.802 kb on + strand, within AO353_20350at 4473.803 kb on - strand, within AO353_20350at 4473.803 kb on - strand, within AO353_20350at 4473.803 kb on - strand, within AO353_20350at 4473.803 kb on - strand, within AO353_20350at 4473.803 kb on - strand, within AO353_20350at 4473.803 kb on - strand, within AO353_20350at 4473.803 kb on - strand, within AO353_20350at 4473.856 kb on + strand, within AO353_20350at 4473.856 kb on + strand, within AO353_20350at 4473.856 kb on + strand, within AO353_20350at 4473.856 kb on + strand, within AO353_20350at 4473.856 kb on + strand, within AO353_20350at 4473.856 kb on + strand, within AO353_20350at 4473.857 kb on - strand, within AO353_20350at 4473.857 kb on - strand, within AO353_20350at 4473.857 kb on - strand, within AO353_20350at 4473.857 kb on - strand, within AO353_20350at 4473.970 kb on + strand, within AO353_20350at 4473.970 kb on + strand, within AO353_20350at 4473.970 kb on + strand, within AO353_20350at 4473.971 kb on - strand, within AO353_20350at 4473.971 kb on - strand, within AO353_20350at 4474.102 kb on + strand, within AO353_20350at 4474.103 kb on - strand, within AO353_20350at 4474.123 kb on + strand, within AO353_20350at 4474.140 kb on - strandat 4474.337 kb on - strandat 4474.337 kb on - strandat 4474.337 kb on - strandat 4474.337 kb on - strandat 4474.337 kb on - strandat 4474.339 kb on - strandat 4474.360 kb on - strandat 4474.396 kb on - strandat 4474.457 kb on - strandat 4474.527 kb on + strandat 4474.527 kb on + strandat 4474.528 kb on - strandat 4474.540 kb on + strandat 4474.541 kb on - strandat 4474.545 kb on + strandat 4474.546 kb on - strandat 4474.546 kb on - strandat 4474.554 kb on + strandat 4474.598 kb on + strandat 4474.598 kb on + strandat 4474.598 kb on + strandat 4474.598 kb on + strandat 4474.598 kb on + strandat 4474.598 kb on + strandat 4474.598 kb on + strandat 4474.598 kb on + strandat 4474.598 kb on + strandat 4474.598 kb on + strandat 4474.599 kb on - strandat 4474.599 kb on - strandat 4474.658 kb on - strandat 4474.658 kb on - strandat 4474.673 kb on + strandat 4474.673 kb on + strandat 4474.673 kb on + strandat 4474.674 kb on - strandat 4474.674 kb on - strandat 4474.674 kb on - strandat 4474.913 kb on + strand, within AO353_20355at 4474.914 kb on - strand, within AO353_20355at 4474.977 kb on - strand, within AO353_20355at 4475.204 kb on + strand, within AO353_20355at 4475.204 kb on + strand, within AO353_20355at 4475.204 kb on + strand, within AO353_20355at 4475.204 kb on + strand, within AO353_20355at 4475.204 kb on + strand, within AO353_20355at 4475.205 kb on - strand, within AO353_20355at 4475.205 kb on - strand, within AO353_20355at 4475.205 kb on - strand, within AO353_20355at 4475.205 kb on - strand, within AO353_20355at 4475.205 kb on - strand, within AO353_20355at 4475.205 kb on - strand, within AO353_20355at 4475.205 kb on - strand, within AO353_20355at 4475.205 kb on - strand, within AO353_20355at 4475.205 kb on - strand, within AO353_20355at 4475.205 kb on - strand, within AO353_20355at 4475.252 kb on + strand, within AO353_20355at 4475.252 kb on + strand, within AO353_20355at 4475.253 kb on - strand, within AO353_20355at 4475.253 kb on - strand, within AO353_20355at 4475.253 kb on - strand, within AO353_20355at 4475.253 kb on - strand, within AO353_20355at 4475.253 kb on - strand, within AO353_20355at 4475.253 kb on - strand, within AO353_20355at 4475.273 kb on + strand, within AO353_20355at 4475.273 kb on + strand, within AO353_20355at 4475.273 kb on + strand, within AO353_20355at 4475.273 kb on + strand, within AO353_20355at 4475.273 kb on + strand, within AO353_20355at 4475.274 kb on - strand, within AO353_20355at 4475.274 kb on - strand, within AO353_20355at 4475.274 kb on - strand, within AO353_20355at 4475.274 kb on - strand, within AO353_20355at 4475.274 kb on - strand, within AO353_20355at 4475.274 kb on - strand, within AO353_20355at 4475.274 kb on - strand, within AO353_20355at 4475.274 kb on - strand, within AO353_20355at 4475.274 kb on - strand, within AO353_20355at 4475.336 kb on + strand, within AO353_20355at 4475.336 kb on + strand, within AO353_20355at 4475.337 kb on - strand, within AO353_20355at 4475.337 kb on - strand, within AO353_20355at 4475.377 kb on + strand, within AO353_20355at 4475.377 kb on + strand, within AO353_20355at 4475.377 kb on + strand, within AO353_20355at 4475.377 kb on + strand, within AO353_20355at 4475.378 kb on - strand, within AO353_20355at 4475.378 kb on - strand, within AO353_20355at 4475.378 kb on - strand, within AO353_20355at 4475.399 kb on + strand, within AO353_20355at 4475.468 kb on + strand, within AO353_20355at 4475.468 kb on + strand, within AO353_20355at 4475.468 kb on + strand, within AO353_20355at 4475.468 kb on + strand, within AO353_20355at 4475.468 kb on + strand, within AO353_20355at 4475.469 kb on - strand, within AO353_20355at 4475.469 kb on - strand, within AO353_20355at 4475.469 kb on - strand, within AO353_20355at 4475.469 kb on - strand, within AO353_20355at 4475.469 kb on - strand, within AO353_20355at 4475.469 kb on - strand, within AO353_20355at 4475.631 kb on - strand, within AO353_20355at 4475.801 kb on + strand, within AO353_20355at 4475.802 kb on - strand, within AO353_20355at 4475.909 kb on + strand, within AO353_20355at 4475.909 kb on + strand, within AO353_20355at 4475.909 kb on + strand, within AO353_20355at 4475.909 kb on + strand, within AO353_20355at 4475.910 kb on - strand, within AO353_20355at 4475.910 kb on - strand, within AO353_20355at 4475.929 kb on + strand, within AO353_20355at 4475.929 kb on + strand, within AO353_20355at 4475.929 kb on + strand, within AO353_20355at 4475.929 kb on + strand, within AO353_20355at 4475.929 kb on + strand, within AO353_20355at 4475.930 kb on - strand, within AO353_20355at 4475.930 kb on - strand, within AO353_20355at 4475.962 kb on + strand, within AO353_20355at 4475.967 kb on - strand, within AO353_20355at 4475.967 kb on - strand, within AO353_20355at 4476.047 kb on + strand, within AO353_20355at 4476.159 kb on - strandat 4476.159 kb on - strandat 4476.159 kb on - strandat 4476.159 kb on - strandat 4476.159 kb on - strandat 4476.260 kb on + strandat 4476.260 kb on + strandat 4476.261 kb on - strandat 4476.300 kb on + strandat 4476.314 kb on - strandat 4476.314 kb on - strandat 4476.328 kb on + strandat 4476.457 kb on + strand, within AO353_20360at 4476.457 kb on + strand, within AO353_20360at 4476.457 kb on + strand, within AO353_20360at 4476.529 kb on + strand, within AO353_20360at 4476.554 kb on + strand, within AO353_20360at 4476.636 kb on + strand, within AO353_20360at 4476.636 kb on + strand, within AO353_20360at 4476.636 kb on + strand, within AO353_20360at 4476.636 kb on + strand, within AO353_20360at 4476.637 kb on - strand, within AO353_20360at 4476.637 kb on - strand, within AO353_20360at 4476.722 kb on + strand, within AO353_20360at 4476.722 kb on + strand, within AO353_20360at 4476.723 kb on - strand, within AO353_20360at 4476.723 kb on - strand, within AO353_20360at 4476.754 kb on + strand, within AO353_20360at 4476.754 kb on + strand, within AO353_20360at 4476.754 kb on + strand, within AO353_20360at 4476.754 kb on + strand, within AO353_20360at 4476.755 kb on - strand, within AO353_20360at 4476.755 kb on - strand, within AO353_20360at 4476.755 kb on - strand, within AO353_20360at 4476.755 kb on - strand, within AO353_20360at 4476.755 kb on - strand, within AO353_20360at 4476.755 kb on - strand, within AO353_20360at 4476.755 kb on - strand, within AO353_20360at 4476.755 kb on - strand, within AO353_20360at 4476.755 kb on - strand, within AO353_20360at 4476.990 kb on + strand, within AO353_20360at 4476.990 kb on + strand, within AO353_20360at 4476.991 kb on - strand, within AO353_20360at 4476.991 kb on - strand, within AO353_20360at 4476.997 kb on + strand, within AO353_20360at 4476.998 kb on - strand, within AO353_20360at 4477.099 kb on + strand, within AO353_20360at 4477.100 kb on - strand, within AO353_20360at 4477.141 kb on + strand, within AO353_20360at 4477.141 kb on + strand, within AO353_20360at 4477.150 kb on + strand, within AO353_20360at 4477.150 kb on + strand, within AO353_20360at 4477.151 kb on - strand, within AO353_20360at 4477.151 kb on - strand, within AO353_20360at 4477.151 kb on - strand, within AO353_20360at 4477.172 kb on + strand, within AO353_20360at 4477.172 kb on + strand, within AO353_20360at 4477.172 kb on + strand, within AO353_20360at 4477.237 kb on + strand, within AO353_20360at 4477.237 kb on + strand, within AO353_20360at 4477.237 kb on + strand, within AO353_20360at 4477.237 kb on + strand, within AO353_20360at 4477.238 kb on - strand, within AO353_20360at 4477.238 kb on - strand, within AO353_20360at 4477.238 kb on - strand, within AO353_20360

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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4,473,577 + AO353_20350 0.37 +1.8
4,473,578 - AO353_20350 0.37 +1.8
4,473,793 + AO353_20350 0.55 +2.8
4,473,793 + AO353_20350 0.55 +0.5
4,473,794 - AO353_20350 0.55 +1.2
4,473,802 + AO353_20350 0.56 +0.2
4,473,802 + AO353_20350 0.56 +0.5
4,473,802 + AO353_20350 0.56 +0.8
4,473,802 + AO353_20350 0.56 +1.3
4,473,802 + AO353_20350 0.56 +0.2
4,473,802 + AO353_20350 0.56 +0.9
4,473,802 + AO353_20350 0.56 +2.5
4,473,802 + AO353_20350 0.56 -0.3
4,473,802 + AO353_20350 0.56 +0.7
4,473,803 - AO353_20350 0.56 +1.1
4,473,803 - AO353_20350 0.56 -0.4
4,473,803 - AO353_20350 0.56 +1.8
4,473,803 - AO353_20350 0.56 +1.5
4,473,803 - AO353_20350 0.56 +2.5
4,473,803 - AO353_20350 0.56 +0.8
4,473,803 - AO353_20350 0.56 +1.5
4,473,856 + AO353_20350 0.61 +0.4
4,473,856 + AO353_20350 0.61 -0.7
4,473,856 + AO353_20350 0.61 +1.2
4,473,856 + AO353_20350 0.61 -0.4
4,473,856 + AO353_20350 0.61 +1.8
4,473,856 + AO353_20350 0.61 -0.1
4,473,857 - AO353_20350 0.61 +1.3
4,473,857 - AO353_20350 0.61 +1.8
4,473,857 - AO353_20350 0.61 -0.1
4,473,857 - AO353_20350 0.61 +0.3
4,473,970 + AO353_20350 0.70 +0.9
4,473,970 + AO353_20350 0.70 +1.0
4,473,970 + AO353_20350 0.70 +1.0
4,473,971 - AO353_20350 0.71 +2.4
4,473,971 - AO353_20350 0.71 +0.2
4,474,102 + AO353_20350 0.82 +0.7
4,474,103 - AO353_20350 0.82 +0.1
4,474,123 + AO353_20350 0.84 -1.3
4,474,140 - -0.2
4,474,337 - +1.5
4,474,337 - +0.2
4,474,337 - +0.7
4,474,337 - +0.4
4,474,337 - +2.2
4,474,339 - +1.8
4,474,360 - -2.8
4,474,396 - -0.5
4,474,457 - -0.4
4,474,527 + +0.8
4,474,527 + +0.5
4,474,528 - +1.6
4,474,540 + -0.3
4,474,541 - +0.5
4,474,545 + -0.0
4,474,546 - +0.6
4,474,546 - -0.7
4,474,554 + -0.8
4,474,598 + +1.5
4,474,598 + +0.3
4,474,598 + -0.8
4,474,598 + +1.0
4,474,598 + +0.5
4,474,598 + +1.0
4,474,598 + +0.6
4,474,598 + +1.0
4,474,598 + +2.1
4,474,598 + +3.1
4,474,599 - +0.2
4,474,599 - +0.7
4,474,658 - +1.8
4,474,658 - +0.8
4,474,673 + +0.9
4,474,673 + +0.2
4,474,673 + +1.6
4,474,674 - +2.0
4,474,674 - +0.4
4,474,674 - +0.8
4,474,913 + AO353_20355 0.20 +1.5
4,474,914 - AO353_20355 0.21 +0.2
4,474,977 - AO353_20355 0.24 -0.5
4,475,204 + AO353_20355 0.38 -0.0
4,475,204 + AO353_20355 0.38 +1.1
4,475,204 + AO353_20355 0.38 +1.8
4,475,204 + AO353_20355 0.38 -0.0
4,475,204 + AO353_20355 0.38 -0.4
4,475,205 - AO353_20355 0.38 +2.3
4,475,205 - AO353_20355 0.38 +0.8
4,475,205 - AO353_20355 0.38 -0.4
4,475,205 - AO353_20355 0.38 +1.5
4,475,205 - AO353_20355 0.38 +0.9
4,475,205 - AO353_20355 0.38 +0.2
4,475,205 - AO353_20355 0.38 +0.1
4,475,205 - AO353_20355 0.38 +2.1
4,475,205 - AO353_20355 0.38 +0.5
4,475,205 - AO353_20355 0.38 -2.1
4,475,252 + AO353_20355 0.40 +0.3
4,475,252 + AO353_20355 0.40 +1.3
4,475,253 - AO353_20355 0.41 +0.2
4,475,253 - AO353_20355 0.41 +0.1
4,475,253 - AO353_20355 0.41 +0.0
4,475,253 - AO353_20355 0.41 -0.4
4,475,253 - AO353_20355 0.41 +2.3
4,475,253 - AO353_20355 0.41 +1.3
4,475,273 + AO353_20355 0.42 -0.3
4,475,273 + AO353_20355 0.42 +0.2
4,475,273 + AO353_20355 0.42 +1.2
4,475,273 + AO353_20355 0.42 +0.2
4,475,273 + AO353_20355 0.42 +2.3
4,475,274 - AO353_20355 0.42 +0.3
4,475,274 - AO353_20355 0.42 +0.4
4,475,274 - AO353_20355 0.42 +3.2
4,475,274 - AO353_20355 0.42 +0.6
4,475,274 - AO353_20355 0.42 +1.0
4,475,274 - AO353_20355 0.42 -0.6
4,475,274 - AO353_20355 0.42 +0.8
4,475,274 - AO353_20355 0.42 -0.1
4,475,274 - AO353_20355 0.42 +0.9
4,475,336 + AO353_20355 0.45 +1.1
4,475,336 + AO353_20355 0.45 -0.0
4,475,337 - AO353_20355 0.45 -0.4
4,475,337 - AO353_20355 0.45 +0.6
4,475,377 + AO353_20355 0.48 +1.8
4,475,377 + AO353_20355 0.48 +1.8
4,475,377 + AO353_20355 0.48 +1.8
4,475,377 + AO353_20355 0.48 +1.0
4,475,378 - AO353_20355 0.48 +0.2
4,475,378 - AO353_20355 0.48 +0.5
4,475,378 - AO353_20355 0.48 +1.6
4,475,399 + AO353_20355 0.49 +0.8
4,475,468 + AO353_20355 0.53 +0.2
4,475,468 + AO353_20355 0.53 +1.1
4,475,468 + AO353_20355 0.53 -1.1
4,475,468 + AO353_20355 0.53 +0.1
4,475,468 + AO353_20355 0.53 -0.6
4,475,469 - AO353_20355 0.53 +1.0
4,475,469 - AO353_20355 0.53 +0.9
4,475,469 - AO353_20355 0.53 +1.8
4,475,469 - AO353_20355 0.53 -0.7
4,475,469 - AO353_20355 0.53 +0.6
4,475,469 - AO353_20355 0.53 +0.9
4,475,631 - AO353_20355 0.63 +1.2
4,475,801 + AO353_20355 0.73 +0.0
4,475,802 - AO353_20355 0.73 +1.6
4,475,909 + AO353_20355 0.79 +1.3
4,475,909 + AO353_20355 0.79 -0.4
4,475,909 + AO353_20355 0.79 +1.0
4,475,909 + AO353_20355 0.79 +0.9
4,475,910 - AO353_20355 0.79 +1.4
4,475,910 - AO353_20355 0.79 -0.8
4,475,929 + AO353_20355 0.80 +0.1
4,475,929 + AO353_20355 0.80 +0.3
4,475,929 + AO353_20355 0.80 +0.9
4,475,929 + AO353_20355 0.80 +1.4
4,475,929 + AO353_20355 0.80 +0.8
4,475,930 - AO353_20355 0.80 +1.0
4,475,930 - AO353_20355 0.80 +2.8
4,475,962 + AO353_20355 0.82 -0.3
4,475,967 - AO353_20355 0.83 +1.5
4,475,967 - AO353_20355 0.83 +1.8
4,476,047 + AO353_20355 0.87 +1.0
4,476,159 - +1.9
4,476,159 - +1.2
4,476,159 - +0.4
4,476,159 - +1.6
4,476,159 - +0.8
4,476,260 + +0.0
4,476,260 + +0.4
4,476,261 - +0.0
4,476,300 + -0.9
4,476,314 - -0.2
4,476,314 - +0.2
4,476,328 + -1.5
4,476,457 + AO353_20360 0.14 -0.8
4,476,457 + AO353_20360 0.14 -0.3
4,476,457 + AO353_20360 0.14 +1.6
4,476,529 + AO353_20360 0.20 +0.7
4,476,554 + AO353_20360 0.23 -1.5
4,476,636 + AO353_20360 0.31 -0.5
4,476,636 + AO353_20360 0.31 -0.4
4,476,636 + AO353_20360 0.31 -0.3
4,476,636 + AO353_20360 0.31 -2.4
4,476,637 - AO353_20360 0.31 -0.0
4,476,637 - AO353_20360 0.31 -0.1
4,476,722 + AO353_20360 0.39 -0.4
4,476,722 + AO353_20360 0.39 -0.8
4,476,723 - AO353_20360 0.39 +0.3
4,476,723 - AO353_20360 0.39 +0.5
4,476,754 + AO353_20360 0.42 -0.4
4,476,754 + AO353_20360 0.42 +0.2
4,476,754 + AO353_20360 0.42 -0.5
4,476,754 + AO353_20360 0.42 -0.1
4,476,755 - AO353_20360 0.42 -1.2
4,476,755 - AO353_20360 0.42 -0.5
4,476,755 - AO353_20360 0.42 +0.4
4,476,755 - AO353_20360 0.42 -1.1
4,476,755 - AO353_20360 0.42 -0.2
4,476,755 - AO353_20360 0.42 -0.4
4,476,755 - AO353_20360 0.42 +0.4
4,476,755 - AO353_20360 0.42 -0.2
4,476,755 - AO353_20360 0.42 -0.4
4,476,990 + AO353_20360 0.64 -0.7
4,476,990 + AO353_20360 0.64 +1.1
4,476,991 - AO353_20360 0.64 -0.5
4,476,991 - AO353_20360 0.64 -0.9
4,476,997 + AO353_20360 0.65 -1.0
4,476,998 - AO353_20360 0.65 +0.0
4,477,099 + AO353_20360 0.74 +0.2
4,477,100 - AO353_20360 0.74 -0.7
4,477,141 + AO353_20360 0.78 -0.7
4,477,141 + AO353_20360 0.78 -0.2
4,477,150 + AO353_20360 0.79 +1.3
4,477,150 + AO353_20360 0.79 +0.9
4,477,151 - AO353_20360 0.79 -0.1
4,477,151 - AO353_20360 0.79 -1.1
4,477,151 - AO353_20360 0.79 +0.3
4,477,172 + AO353_20360 0.81 -0.2
4,477,172 + AO353_20360 0.81 -0.3
4,477,172 + AO353_20360 0.81 +0.8
4,477,237 + AO353_20360 0.87 +0.9
4,477,237 + AO353_20360 0.87 -0.7
4,477,237 + AO353_20360 0.87 -0.2
4,477,237 + AO353_20360 0.87 -1.4
4,477,238 - AO353_20360 0.87 +1.2
4,477,238 - AO353_20360 0.87 +1.0
4,477,238 - AO353_20360 0.87 -1.3

Or see this region's nucleotide sequence