Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_18010

Experiment: butyrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	butyrate (C)
3,963,901	+		AO353_18005	0.15	+0.4
3,963,902	-		AO353_18005	0.15	+0.4
3,964,036	+		AO353_18005	0.30	+1.7
3,964,037	-		AO353_18005	0.30	-2.0
3,964,100	+		AO353_18005	0.37	+0.3
3,964,123	+		AO353_18005	0.39	-1.4
3,964,227	-		AO353_18005	0.51	+0.5
3,964,227	-		AO353_18005	0.51	-0.0
3,964,227	-		AO353_18005	0.51	+0.5
3,964,227	-		AO353_18005	0.51	-1.7
3,964,430	+		AO353_18005	0.73	-0.5
3,964,431	-		AO353_18005	0.73	-0.8
3,964,431	-		AO353_18005	0.73	-1.4
3,964,548	+		AO353_18005	0.86	-3.0
3,964,658	+				-0.6
3,964,659	-				+0.1
3,964,659	-				-0.8
3,964,659	-				-0.7
3,964,676	+				-1.5
3,964,735	+				-0.2
3,964,735	+				-0.1
3,964,736	-				+0.5
3,964,852	-				-0.7
3,964,852	-				-0.7
3,964,950	+				-2.5
3,964,950	+				-0.0
3,964,951	-				-1.0
3,964,951	-				-0.6
3,964,951	-				+1.0
3,964,998	+		AO353_18010	0.13	-1.9
3,964,999	-		AO353_18010	0.13	-0.1
3,964,999	-		AO353_18010	0.13	+1.1
3,964,999	-		AO353_18010	0.13	-1.0
3,964,999	-		AO353_18010	0.13	-1.6
3,964,999	-		AO353_18010	0.13	-1.1
3,964,999	-		AO353_18010	0.13	-1.7
3,964,999	-		AO353_18010	0.13	-1.9
3,965,029	-		AO353_18010	0.15	-2.8
3,965,133	+		AO353_18010	0.24	-0.5
3,965,133	+		AO353_18010	0.24	-0.1
3,965,133	+		AO353_18010	0.24	-1.0
3,965,133	+		AO353_18010	0.24	-1.6
3,965,134	-		AO353_18010	0.24	-0.0
3,965,134	-		AO353_18010	0.24	+0.2
3,965,162	-		AO353_18010	0.26	-1.1
3,965,162	-		AO353_18010	0.26	+0.4
3,965,205	+		AO353_18010	0.30	-1.3
3,965,206	-		AO353_18010	0.30	-3.2
3,965,206	-		AO353_18010	0.30	-1.8
3,965,206	-		AO353_18010	0.30	+0.6
3,965,206	-		AO353_18010	0.30	-0.0
3,965,223	+				-0.3
3,965,223	+		AO353_18010	0.32	-1.5
3,965,223	+		AO353_18010	0.32	-2.4
3,965,223	+		AO353_18010	0.32	-1.3
3,965,224	-		AO353_18010	0.32	-1.0
3,965,224	-		AO353_18010	0.32	+0.8
3,965,224	-		AO353_18010	0.32	-0.0
3,965,224	-		AO353_18010	0.32	-1.3
3,965,224	-		AO353_18010	0.32	-1.0
3,965,224	-		AO353_18010	0.32	-1.1
3,965,229	+		AO353_18010	0.32	-1.1
3,965,229	+		AO353_18010	0.32	-1.2
3,965,229	+		AO353_18010	0.32	-0.6
3,965,229	+		AO353_18010	0.32	-0.8
3,965,229	+		AO353_18010	0.32	-0.8
3,965,229	+		AO353_18010	0.32	-1.0
3,965,229	+		AO353_18010	0.32	+1.7
3,965,229	+		AO353_18010	0.32	-2.5
3,965,229	+		AO353_18010	0.32	-1.1
3,965,230	-		AO353_18010	0.32	-2.1
3,965,230	-		AO353_18010	0.32	-1.6
3,965,230	-		AO353_18010	0.32	+0.5
3,965,489	+		AO353_18010	0.54	-1.6
3,965,490	-		AO353_18010	0.54	-0.7
3,965,518	-		AO353_18010	0.57	-0.5
3,965,835	+		AO353_18010	0.84	+1.1
3,965,836	-		AO353_18010	0.84	-3.2
3,965,836	-		AO353_18010	0.84	-1.0
3,965,836	-		AO353_18010	0.84	-1.3
3,965,836	-		AO353_18010	0.84	+0.2
3,965,904	+		AO353_18010	0.89	-0.8
3,965,904	+		AO353_18010	0.89	+0.4
3,965,904	+		AO353_18010	0.89	-2.4
3,965,904	+		AO353_18010	0.89	-1.8
3,965,905	-		AO353_18010	0.89	-1.3
3,965,905	-		AO353_18010	0.89	-0.9
3,965,907	+		AO353_18010	0.90	-1.7
3,965,907	+		AO353_18010	0.90	-0.3
3,965,908	-		AO353_18010	0.90	+0.5
3,965,908	-		AO353_18010	0.90	-0.6
3,965,908	-		AO353_18010	0.90	-0.3
3,965,976	-				-1.7
3,966,049	+				-1.2
3,966,049	+				-0.0
3,966,049	+				-0.0
3,966,050	-				-2.2
3,966,050	-				-2.7
3,966,050	-				+0.4
3,966,058	+				-1.1
3,966,059	-				+0.2
3,966,379	+		AO353_18015	0.38	-0.7
3,966,379	+		AO353_18015	0.38	-0.2
3,966,379	+		AO353_18015	0.38	-1.0
3,966,379	+		AO353_18015	0.38	+0.4
3,966,379	+		AO353_18015	0.38	-1.0
3,966,379	+		AO353_18015	0.38	-1.1
3,966,380	-		AO353_18015	0.38	-1.1
3,966,380	-		AO353_18015	0.38	-0.8
3,966,380	-		AO353_18015	0.38	-0.1
3,966,380	-		AO353_18015	0.38	+0.5
3,966,380	-		AO353_18015	0.38	-0.5
3,966,437	+		AO353_18015	0.45	-2.5
3,966,437	+		AO353_18015	0.45	-1.0
3,966,437	+		AO353_18015	0.45	-1.1
3,966,437	+		AO353_18015	0.45	-2.3
3,966,438	-				-0.8
3,966,438	-		AO353_18015	0.45	+0.5
3,966,438	-		AO353_18015	0.45	-1.7
3,966,487	+		AO353_18015	0.50	-1.0
3,966,488	-		AO353_18015	0.51	+0.5
3,966,493	+		AO353_18015	0.51	-2.1
3,966,493	+		AO353_18015	0.51	+0.7
3,966,493	+		AO353_18015	0.51	-2.3
3,966,494	-		AO353_18015	0.51	-0.1
3,966,494	-		AO353_18015	0.51	-3.7
3,966,494	-		AO353_18015	0.51	+0.2
3,966,494	-		AO353_18015	0.51	-3.0
3,966,494	-		AO353_18015	0.51	-1.8
3,966,494	-		AO353_18015	0.51	-0.2
3,966,625	+		AO353_18015	0.67	+1.4
3,966,625	+		AO353_18015	0.67	-0.3
3,966,625	+		AO353_18015	0.67	+0.4
3,966,625	+		AO353_18015	0.67	+0.0
3,966,626	-		AO353_18015	0.67	-0.2
3,966,626	-		AO353_18015	0.67	-2.3
3,966,626	-		AO353_18015	0.67	-1.6
3,966,626	-		AO353_18015	0.67	-1.6
3,966,626	-		AO353_18015	0.67	-1.3
3,966,626	-		AO353_18015	0.67	-1.2
3,966,626	-		AO353_18015	0.67	-0.4
3,966,691	+		AO353_18015	0.75	+1.3
3,966,692	-		AO353_18015	0.75	-0.0
3,966,697	+		AO353_18015	0.75	-1.9
3,966,880	+				-0.3
3,966,880	+				-1.8
3,966,880	+				-1.0
3,966,880	+				+0.2
3,966,880	+				-0.8
3,966,880	+				-1.2
3,966,880	+				-1.5
3,966,880	+				-0.7
3,966,880	+				-0.3
3,966,880	+				-1.2
3,966,880	+				-1.5
3,966,881	-				-1.0
3,966,881	-				+0.1
3,966,881	-				-0.6
3,966,881	-				-0.3
3,966,881	-				+0.2
3,966,881	-				-2.1
3,966,881	-				-1.2
3,966,881	-				-1.8
3,966,881	-				-2.3
3,966,909	+				-0.6
3,966,910	-				-1.2
3,966,958	+				-0.8
3,966,959	-				+1.1
3,966,964	+				+0.8
3,966,964	+				-1.2
3,966,964	+				-2.0
3,966,964	+				-1.2
3,966,964	+				-1.0
3,966,965	-				-0.7
3,966,965	-				+2.0
3,966,974	+				-1.2
3,966,974	+				-2.9
3,966,975	-				+1.0
3,966,975	-				-1.0
3,966,975	-				-0.5
3,966,977	-				+0.7
3,967,013	+				-1.1
3,967,013	+				+0.1
3,967,014	-				+0.7