Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_17425

Experiment: butyrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	butyrate (C)
3,847,869	+		AO353_17420	0.25	+1.0
3,847,869	+		AO353_17420	0.25	+0.8
3,847,870	-		AO353_17420	0.25	+0.6
3,847,870	-		AO353_17420	0.25	+0.4
3,847,880	-		AO353_17420	0.26	+1.0
3,847,894	+		AO353_17420	0.27	+1.4
3,847,894	+		AO353_17420	0.27	+0.1
3,847,895	-		AO353_17420	0.28	-1.8
3,847,895	-		AO353_17420	0.28	-0.7
3,848,097	-		AO353_17420	0.47	+1.7
3,848,105	+		AO353_17420	0.48	+1.1
3,848,112	-		AO353_17420	0.49	+1.4
3,848,145	+		AO353_17420	0.52	-0.8
3,848,145	+		AO353_17420	0.52	-0.3
3,848,146	-		AO353_17420	0.52	-0.9
3,848,146	-		AO353_17420	0.52	-0.4
3,848,146	-		AO353_17420	0.52	+0.9
3,848,185	+		AO353_17420	0.56	-1.3
3,848,185	+		AO353_17420	0.56	-0.5
3,848,185	+		AO353_17420	0.56	-1.9
3,848,185	+		AO353_17420	0.56	-0.9
3,848,186	-		AO353_17420	0.56	+0.1
3,848,186	-		AO353_17420	0.56	+0.9
3,848,200	+		AO353_17420	0.57	-0.8
3,848,200	+		AO353_17420	0.57	+0.3
3,848,201	-		AO353_17420	0.58	+0.2
3,848,201	-		AO353_17420	0.58	+0.4
3,848,268	+		AO353_17420	0.64	+0.2
3,848,329	+		AO353_17420	0.70	+0.2
3,848,329	+		AO353_17420	0.70	-0.6
3,848,329	+		AO353_17420	0.70	+2.0
3,848,329	+		AO353_17420	0.70	-1.1
3,848,330	-		AO353_17420	0.70	-0.2
3,848,330	-		AO353_17420	0.70	-0.3
3,848,333	-		AO353_17420	0.70	-0.1
3,848,333	-		AO353_17420	0.70	-0.4
3,848,333	-		AO353_17420	0.70	-0.3
3,848,333	-		AO353_17420	0.70	-0.3
3,848,333	-		AO353_17420	0.70	-1.1
3,848,402	+		AO353_17420	0.77	-0.2
3,848,403	-		AO353_17420	0.77	+1.4
3,848,601	+				-0.5
3,848,601	+				-0.9
3,848,601	+				+0.6
3,848,601	+				+0.0
3,848,677	+				+0.3
3,848,678	-				+0.1
3,848,678	-				-0.8
3,848,771	+				-0.6
3,848,870	+				-0.1
3,848,870	+				+0.0
3,848,870	+				+0.2
3,848,871	-				-0.1
3,848,871	-				-1.1
3,848,871	-				-0.7
3,848,871	-				+0.7
3,849,143	+		AO353_17425	0.31	-0.5
3,849,144	-		AO353_17425	0.31	-0.6
3,849,144	-		AO353_17425	0.31	-1.1
3,849,392	+		AO353_17425	0.52	-1.1
3,849,393	-		AO353_17425	0.53	+0.3
3,849,393	-		AO353_17425	0.53	-1.1
3,849,393	-		AO353_17425	0.53	-1.3
3,849,393	-		AO353_17425	0.53	+0.5
3,849,518	+		AO353_17425	0.63	-0.9
3,849,519	-		AO353_17425	0.64	-2.5
3,849,519	-		AO353_17425	0.64	+0.0
3,849,519	-		AO353_17425	0.64	+0.2
3,849,519	-		AO353_17425	0.64	+0.6
3,849,602	+		AO353_17425	0.71	-0.1
3,849,602	+		AO353_17425	0.71	+0.0
3,849,602	+		AO353_17425	0.71	-1.3
3,849,603	-		AO353_17425	0.71	-1.1
3,849,603	-		AO353_17425	0.71	+1.4
3,849,603	-		AO353_17425	0.71	+1.2
3,849,603	-		AO353_17425	0.71	-0.8
3,849,603	-		AO353_17425	0.71	+0.9
3,849,648	+		AO353_17425	0.75	-0.4
3,849,648	+		AO353_17425	0.75	+0.5
3,849,648	+		AO353_17425	0.75	+0.7
3,849,649	-		AO353_17425	0.75	+0.6
3,849,649	-		AO353_17425	0.75	-1.8
3,849,649	-		AO353_17425	0.75	-1.6
3,849,649	-		AO353_17425	0.75	+1.0
3,849,945	+				-1.1
3,850,001	-				+2.0
3,850,044	+				-1.0
3,850,044	+				-0.1
3,850,045	-				-1.1
3,850,045	-				-1.6
3,850,045	-				+0.8
3,850,045	-				-0.1
3,850,045	-				-1.4
3,850,098	+				+0.7
3,850,098	+				+0.1
3,850,098	+				-0.4
3,850,099	-				-1.5
3,850,099	-				-0.9
3,850,099	-				+0.2
3,850,099	-				+1.6
3,850,136	-		AO353_17430	0.14	-0.7
3,850,170	+		AO353_17430	0.19	-1.2
3,850,171	-		AO353_17430	0.19	-0.3
3,850,184	+		AO353_17430	0.21	+0.1
3,850,184	+		AO353_17430	0.21	-0.6
3,850,184	+		AO353_17430	0.21	-0.4
3,850,184	+		AO353_17430	0.21	+0.4
3,850,184	+		AO353_17430	0.21	+0.9
3,850,185	-		AO353_17430	0.21	-0.4
3,850,185	-		AO353_17430	0.21	-0.0
3,850,185	-		AO353_17430	0.21	+1.8
3,850,185	-		AO353_17430	0.21	-0.8
3,850,185	-		AO353_17430	0.21	-0.0
3,850,185	-		AO353_17430	0.21	+1.4
3,850,223	+		AO353_17430	0.26	+0.2
3,850,223	+		AO353_17430	0.26	-0.3
3,850,247	+		AO353_17430	0.29	+0.8
3,850,247	+		AO353_17430	0.29	+0.5
3,850,247	+		AO353_17430	0.29	-1.4
3,850,248	-		AO353_17430	0.29	+0.6
3,850,248	-		AO353_17430	0.29	-1.5
3,850,248	-		AO353_17430	0.29	-0.2
3,850,248	-		AO353_17430	0.29	+0.0
3,850,248	-		AO353_17430	0.29	-0.8
3,850,251	+		AO353_17430	0.30	+0.2
3,850,251	+		AO353_17430	0.30	+0.1
3,850,251	+		AO353_17430	0.30	-1.1
3,850,251	+		AO353_17430	0.30	-0.3
3,850,251	+		AO353_17430	0.30	+1.0
3,850,251	+		AO353_17430	0.30	+1.9
3,850,251	+		AO353_17430	0.30	+0.7
3,850,252	-		AO353_17430	0.30	+0.8
3,850,252	-		AO353_17430	0.30	+0.8
3,850,252	-		AO353_17430	0.30	-0.3
3,850,252	-		AO353_17430	0.30	+2.2
3,850,252	-		AO353_17430	0.30	+1.7
3,850,252	-		AO353_17430	0.30	-0.5
3,850,252	-		AO353_17430	0.30	-0.6
3,850,470	+		AO353_17430	0.59	-2.6
3,850,470	+		AO353_17430	0.59	-0.9
3,850,470	+		AO353_17430	0.59	+0.1
3,850,470	+		AO353_17430	0.59	-0.4
3,850,470	+		AO353_17430	0.59	-0.1
3,850,470	+		AO353_17430	0.59	-0.4
3,850,470	+		AO353_17430	0.59	-1.5
3,850,470	+		AO353_17430	0.59	+0.4
3,850,470	+		AO353_17430	0.59	-0.2
3,850,470	+		AO353_17430	0.59	+0.0
3,850,471	-		AO353_17430	0.59	-2.2
3,850,471	-		AO353_17430	0.59	+0.0
3,850,471	-		AO353_17430	0.59	+0.1
3,850,471	-		AO353_17430	0.59	+0.1
3,850,471	-		AO353_17430	0.59	+0.1
3,850,589	+		AO353_17430	0.75	-1.1
3,850,591	+		AO353_17430	0.75	+0.0
3,850,591	+		AO353_17430	0.75	+0.1
3,850,591	+		AO353_17430	0.75	-0.2
3,850,592	-		AO353_17430	0.76	+0.6
3,850,592	-		AO353_17430	0.76	-2.1
3,850,592	-		AO353_17430	0.76	+0.3
3,850,592	-		AO353_17430	0.76	-2.1
3,850,632	-		AO353_17430	0.81	+0.2
3,850,691	+		AO353_17430	0.89	-0.1
3,850,691	+		AO353_17430	0.89	+0.6
3,850,691	+		AO353_17430	0.89	+1.6
3,850,691	+		AO353_17430	0.89	-0.3
3,850,691	+		AO353_17430	0.89	-0.8
3,850,692	-		AO353_17430	0.89	-1.1
3,850,692	-		AO353_17430	0.89	-1.1
3,850,692	-		AO353_17430	0.89	-0.9
3,850,692	-		AO353_17430	0.89	+0.2
3,850,692	-		AO353_17430	0.89	-1.8
3,850,708	+				-0.7
3,850,726	-				+0.4
3,850,740	+				-0.8
3,850,740	+				-0.8
3,850,741	-				+0.0
3,850,741	-				-1.0
3,850,741	-				-0.1
3,850,741	-				+0.3
3,850,741	-				-0.2
3,850,741	-				-0.4
3,850,741	-				+1.7
3,850,741	-				+0.1
3,850,741	-				+1.2
3,850,741	-				-2.4
3,850,787	+				-1.0
3,850,787	+				+0.7
3,850,787	+				+1.4
3,850,787	+				+0.2
3,850,787	+				-1.2
3,850,787	+				-1.1
3,850,787	+				-0.1
3,850,788	-				-0.8
3,850,788	-				-0.4
3,850,788	-				-0.6
3,850,788	-				+1.6
3,850,788	-				+0.1
3,850,788	-				+0.6
3,850,788	-				+1.4
3,850,788	-				-1.0
3,850,788	-				+1.4
3,850,788	-				+0.8
3,850,857	+				+0.6
3,850,857	+				+0.9
3,850,857	+				-0.7
3,850,857	+				+0.3
3,850,857	+				+0.2
3,850,857	+				-0.4
3,850,857	+				-0.8
3,850,857	+				-1.2
3,850,857	+				+0.2
3,850,857	+				-0.1
3,850,857	+				-0.3
3,850,857	+				+0.2
3,850,858	-				+0.5
3,850,858	-				+0.3
3,850,858	-				+0.6
3,850,858	-				-0.6
3,850,858	-				+0.6
3,850,858	-				-2.0
3,850,858	-				-0.1
3,850,858	-				-1.8
3,850,859	+				-0.1
3,850,859	+				-1.6
3,850,871	+				-1.8
3,850,872	-				-0.3
3,850,885	+				+0.1
3,850,888	+				+0.3
3,850,889	-				+0.7
3,850,889	-				+1.9