Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_06340

Experiment: butyrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	butyrate (C)
1,411,809	+		AO353_06335	0.46	-0.5
1,411,809	+		AO353_06335	0.46	-0.3
1,411,974	+		AO353_06335	0.57	+0.7
1,411,974	+		AO353_06335	0.57	+1.7
1,411,974	+		AO353_06335	0.57	+0.8
1,411,975	-		AO353_06335	0.57	+0.0
1,411,975	-		AO353_06335	0.57	-1.5
1,411,975	-		AO353_06335	0.57	-0.5
1,411,975	-		AO353_06335	0.57	-0.2
1,411,975	-		AO353_06335	0.57	-0.6
1,411,975	-		AO353_06335	0.57	-0.3
1,411,975	-		AO353_06335	0.57	-0.2
1,411,983	+		AO353_06335	0.57	+0.4
1,411,983	+		AO353_06335	0.57	+1.0
1,411,983	+		AO353_06335	0.57	-2.0
1,411,983	+		AO353_06335	0.57	-0.4
1,411,983	+		AO353_06335	0.57	+0.2
1,411,983	+		AO353_06335	0.57	-0.2
1,411,983	+		AO353_06335	0.57	-0.5
1,411,983	+		AO353_06335	0.57	-0.5
1,411,983	+		AO353_06335	0.57	-0.6
1,411,983	+		AO353_06335	0.57	+1.0
1,411,983	+		AO353_06335	0.57	-0.7
1,411,983	+		AO353_06335	0.57	+0.2
1,411,983	+		AO353_06335	0.57	+0.6
1,411,983	+		AO353_06335	0.57	+1.0
1,411,983	+		AO353_06335	0.57	-1.2
1,411,984	-		AO353_06335	0.58	+0.2
1,411,984	-		AO353_06335	0.58	+0.4
1,411,984	-		AO353_06335	0.58	+0.3
1,411,984	-		AO353_06335	0.58	+0.6
1,411,984	-		AO353_06335	0.58	+0.9
1,411,984	-		AO353_06335	0.58	-1.7
1,411,984	-		AO353_06335	0.58	-0.5
1,412,034	+		AO353_06335	0.61	+0.8
1,412,034	+		AO353_06335	0.61	-0.5
1,412,034	+				+1.7
1,412,034	+		AO353_06335	0.61	-1.3
1,412,035	-		AO353_06335	0.61	-0.9
1,412,035	-		AO353_06335	0.61	-3.0
1,412,035	-		AO353_06335	0.61	-2.3
1,412,035	-		AO353_06335	0.61	-0.4
1,412,035	-		AO353_06335	0.61	+0.7
1,412,035	-		AO353_06335	0.61	-1.8
1,412,119	-		AO353_06335	0.67	+1.1
1,412,235	+		AO353_06335	0.75	+0.5
1,412,235	+		AO353_06335	0.75	+1.2
1,412,235	+		AO353_06335	0.75	+0.5
1,412,235	+		AO353_06335	0.75	+0.5
1,412,235	+		AO353_06335	0.75	-1.2
1,412,236	-		AO353_06335	0.75	+1.4
1,412,236	-		AO353_06335	0.75	+0.5
1,412,236	-		AO353_06335	0.75	+1.2
1,412,322	+		AO353_06335	0.81	-1.1
1,412,322	+		AO353_06335	0.81	-0.1
1,412,322	+		AO353_06335	0.81	+1.1
1,412,323	-		AO353_06335	0.81	-1.0
1,412,323	-		AO353_06335	0.81	-0.4
1,412,323	-		AO353_06335	0.81	+1.0
1,412,323	-		AO353_06335	0.81	+1.0
1,412,326	+		AO353_06335	0.81	-0.2
1,412,327	-		AO353_06335	0.81	+1.2
1,412,327	-		AO353_06335	0.81	-0.6
1,412,327	-		AO353_06335	0.81	+0.7
1,412,327	-		AO353_06335	0.81	-0.5
1,412,361	+		AO353_06335	0.83	+2.0
1,412,361	+		AO353_06335	0.83	+1.6
1,412,361	+		AO353_06335	0.83	-2.2
1,412,361	+		AO353_06335	0.83	-0.8
1,412,361	+		AO353_06335	0.83	-0.3
1,412,361	+		AO353_06335	0.83	+0.7
1,412,361	+		AO353_06335	0.83	+0.5
1,412,361	+		AO353_06335	0.83	-2.1
1,412,361	+		AO353_06335	0.83	-0.2
1,412,361	+		AO353_06335	0.83	-1.6
1,412,361	+		AO353_06335	0.83	+0.8
1,412,361	+		AO353_06335	0.83	-2.0
1,412,361	+		AO353_06335	0.83	-1.8
1,412,361	+		AO353_06335	0.83	-1.0
1,412,362	-		AO353_06335	0.83	-1.3
1,412,362	-		AO353_06335	0.83	-1.8
1,412,362	-		AO353_06335	0.83	-0.1
1,412,362	-		AO353_06335	0.83	-0.1
1,412,362	-		AO353_06335	0.83	+1.1
1,412,362	-		AO353_06335	0.83	+0.8
1,412,362	-		AO353_06335	0.83	-0.6
1,412,362	-		AO353_06335	0.83	+0.1
1,412,362	-		AO353_06335	0.83	-0.8
1,412,362	-		AO353_06335	0.83	-0.2
1,412,362	-		AO353_06335	0.83	+2.4
1,412,362	-		AO353_06335	0.83	+0.1
1,412,362	-		AO353_06335	0.83	-0.2
1,412,362	-		AO353_06335	0.83	-0.1
1,412,388	+		AO353_06335	0.85	+0.8
1,412,388	+		AO353_06335	0.85	-0.2
1,412,389	-		AO353_06335	0.85	-1.7
1,412,427	+		AO353_06335	0.88	-2.8
1,412,427	+		AO353_06335	0.88	+0.1
1,412,427	+		AO353_06335	0.88	+0.2
1,412,427	+		AO353_06335	0.88	-0.4
1,412,427	+		AO353_06335	0.88	+0.7
1,412,427	+		AO353_06335	0.88	-1.8
1,412,427	+		AO353_06335	0.88	-0.7
1,412,427	+		AO353_06335	0.88	+0.5
1,412,427	+		AO353_06335	0.88	-1.0
1,412,427	-		AO353_06335	0.88	+0.1
1,412,428	-		AO353_06335	0.88	-1.8
1,412,428	-		AO353_06335	0.88	-3.5
1,412,428	-		AO353_06335	0.88	-0.4
1,412,428	-		AO353_06335	0.88	-1.3
1,412,428	-		AO353_06335	0.88	+0.6
1,412,428	-		AO353_06335	0.88	+0.1
1,412,438	+		AO353_06335	0.89	+0.2
1,412,438	+				+0.7
1,412,438	+		AO353_06335	0.89	-1.0
1,412,438	+		AO353_06335	0.89	+0.5
1,412,439	-		AO353_06335	0.89	-0.2
1,412,439	-		AO353_06335	0.89	-0.0
1,412,439	-		AO353_06335	0.89	+0.4
1,412,499	+				+0.7
1,412,499	+				+0.9
1,412,499	+				+1.9
1,412,499	+				+0.4
1,412,590	+				-0.8
1,412,590	+				-0.5
1,412,591	-				-0.1
1,412,591	-				+0.6
1,412,745	+				-0.6
1,412,745	+				+1.3
1,412,755	+				-0.5
1,412,947	+		AO353_06340	0.12	-0.4
1,413,146	-		AO353_06340	0.24	+0.4
1,413,175	+		AO353_06340	0.26	+1.8
1,413,175	+		AO353_06340	0.26	+1.7
1,413,175	+		AO353_06340	0.26	-1.2
1,413,176	-		AO353_06340	0.26	+0.3
1,413,176	-		AO353_06340	0.26	-0.5
1,413,241	+		AO353_06340	0.30	-1.3
1,413,241	+		AO353_06340	0.30	-0.3
1,413,241	+		AO353_06340	0.30	+0.7
1,413,242	-		AO353_06340	0.30	+1.4
1,413,242	-		AO353_06340	0.30	-1.0
1,413,242	-		AO353_06340	0.30	-0.1
1,413,242	-		AO353_06340	0.30	+0.1
1,413,242	-		AO353_06340	0.30	+1.3
1,413,631	+		AO353_06340	0.53	+0.2
1,413,631	+		AO353_06340	0.53	-0.1
1,413,631	+		AO353_06340	0.53	+0.7
1,413,631	+		AO353_06340	0.53	-0.1
1,413,631	+		AO353_06340	0.53	-0.1
1,413,631	+		AO353_06340	0.53	+0.5
1,413,631	+		AO353_06340	0.53	-0.5
1,413,631	+		AO353_06340	0.53	-1.3
1,413,631	+		AO353_06340	0.53	+2.3
1,413,631	+		AO353_06340	0.53	-2.2
1,413,631	+		AO353_06340	0.53	+0.6
1,413,631	+		AO353_06340	0.53	-0.6
1,413,632	-		AO353_06340	0.53	+1.4
1,413,632	-		AO353_06340	0.53	-0.6
1,413,632	-		AO353_06340	0.53	-1.2
1,413,632	-		AO353_06340	0.53	-1.6
1,413,632	-		AO353_06340	0.53	-1.2
1,413,632	-		AO353_06340	0.53	+0.1
1,413,632	-		AO353_06340	0.53	-0.7
1,413,632	-		AO353_06340	0.53	+0.9
1,413,632	-		AO353_06340	0.53	+0.2
1,413,766	+		AO353_06340	0.61	+2.0
1,413,767	-		AO353_06340	0.61	+0.3
1,413,767	-		AO353_06340	0.61	+1.1
1,413,767	-		AO353_06340	0.61	-0.2
1,413,907	+		AO353_06340	0.70	+1.3
1,413,908	-		AO353_06340	0.70	+1.0
1,413,908	-		AO353_06340	0.70	-0.2
1,414,033	+		AO353_06340	0.78	+0.1
1,414,034	-		AO353_06340	0.78	+0.5
1,414,034	-		AO353_06340	0.78	+0.9
1,414,132	+		AO353_06340	0.84	+0.4
1,414,132	+		AO353_06340	0.84	+1.5
1,414,132	+		AO353_06340	0.84	+1.0
1,414,133	-		AO353_06340	0.84	-1.7
1,414,133	-		AO353_06340	0.84	-1.8
1,414,133	-		AO353_06340	0.84	-0.4
1,414,256	-				+0.0
1,414,367	+				-0.3
1,414,367	+				-0.6
1,414,367	+				+0.6
1,414,367	+				-0.2
1,414,439	+				+1.1
1,414,439	+				+1.1
1,414,439	+				-1.3
1,414,440	-				+0.7
1,414,440	-				+0.1
1,414,440	-				-0.2
1,414,440	-				+0.6
1,414,440	-				-0.2
1,414,440	-				-1.1
1,414,471	+				+0.3
1,414,471	+				-2.1
1,414,483	+				+0.1
1,414,504	+				-0.6
1,414,505	-				-0.0
1,414,524	+				+0.3
1,414,524	+				+2.7
1,414,524	+				-2.0
1,414,524	+				-0.7
1,414,569	+				-0.1
1,414,569	+				-0.5
1,414,570	-				+1.3
1,414,570	-				+0.4
1,414,570	-				-0.3
1,414,771	+		AO353_06345	0.12	-0.9
1,414,871	+		AO353_06345	0.16	+0.2
1,415,056	-		AO353_06345	0.24	-0.0
1,415,056	-		AO353_06345	0.24	-1.1
1,415,097	+		AO353_06345	0.26	-1.6
1,415,097	+		AO353_06345	0.26	-0.4
1,415,097	+		AO353_06345	0.26	+1.0
1,415,098	-		AO353_06345	0.26	+1.0
1,415,098	-		AO353_06345	0.26	-0.1
1,415,098	-		AO353_06345	0.26	+0.3
1,415,098	-		AO353_06345	0.26	+0.1
1,415,098	-		AO353_06345	0.26	-1.0