Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_06225

Experiment: butyrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	butyrate (C)
1,387,395	+				+1.2
1,387,395	+				-0.1
1,387,396	-				+0.5
1,387,396	-				+0.6
1,387,413	+				+0.6
1,387,551	-		AO353_06220	0.17	+0.2
1,387,551	-		AO353_06220	0.17	-0.7
1,387,632	+		AO353_06220	0.27	+0.7
1,387,632	+		AO353_06220	0.27	-1.0
1,387,633	-		AO353_06220	0.27	-0.6
1,387,794	+		AO353_06220	0.48	-1.8
1,387,795	-		AO353_06220	0.48	+0.7
1,387,795	-		AO353_06220	0.48	-0.2
1,387,795	-		AO353_06220	0.48	+0.8
1,387,795	-		AO353_06220	0.48	-0.3
1,387,795	-		AO353_06220	0.48	+1.6
1,387,795	-		AO353_06220	0.48	-1.7
1,387,795	-		AO353_06220	0.48	+0.9
1,387,830	+		AO353_06220	0.53	+1.2
1,387,830	+		AO353_06220	0.53	+0.2
1,387,831	-		AO353_06220	0.53	-1.7
1,387,831	-		AO353_06220	0.53	+1.5
1,387,954	+		AO353_06220	0.69	+0.1
1,388,046	+		AO353_06220	0.80	-1.1
1,388,046	+		AO353_06220	0.80	+0.4
1,388,047	-		AO353_06220	0.81	+0.9
1,388,047	-		AO353_06220	0.81	+0.2
1,388,149	+				-1.7
1,388,150	-				-0.1
1,388,230	-				+0.2
1,388,289	+				+1.4
1,388,290	-				-0.3
1,388,351	-				-0.1
1,388,628	+		AO353_06225	0.13	+0.8
1,388,628	+		AO353_06225	0.13	-1.0
1,388,628	+		AO353_06225	0.13	-1.8
1,388,629	-		AO353_06225	0.14	-1.0
1,388,629	-		AO353_06225	0.14	-0.5
1,388,656	-		AO353_06225	0.15	+0.9
1,388,820	+		AO353_06225	0.24	+0.3
1,388,820	+		AO353_06225	0.24	-1.9
1,388,820	+		AO353_06225	0.24	-0.2
1,389,005	-		AO353_06225	0.35	-2.0
1,389,005	-		AO353_06225	0.35	-0.3
1,389,005	-		AO353_06225	0.35	-1.0
1,389,346	+		AO353_06225	0.54	-0.7
1,389,346	+		AO353_06225	0.54	+2.2
1,389,399	+		AO353_06225	0.57	-0.4
1,389,399	+		AO353_06225	0.57	+0.4
1,389,399	+		AO353_06225	0.57	-0.6
1,389,400	-		AO353_06225	0.57	-1.7
1,389,400	-		AO353_06225	0.57	-0.7
1,389,400	-		AO353_06225	0.57	-1.2
1,389,466	+		AO353_06225	0.61	-0.0
1,389,467	-		AO353_06225	0.61	+0.7
1,389,467	-		AO353_06225	0.61	-0.7
1,389,474	-		AO353_06225	0.61	+0.1
1,389,508	-		AO353_06225	0.63	+0.5
1,389,510	+		AO353_06225	0.63	+0.3
1,389,510	+		AO353_06225	0.63	+1.8
1,389,510	+		AO353_06225	0.63	-0.3
1,389,510	+		AO353_06225	0.63	+0.2
1,389,510	+		AO353_06225	0.63	+0.4
1,389,511	-		AO353_06225	0.63	-0.5
1,389,511	-		AO353_06225	0.63	-0.7
1,389,511	-		AO353_06225	0.63	-1.8
1,389,511	-		AO353_06225	0.63	-0.2
1,389,511	-		AO353_06225	0.63	+1.1
1,389,511	-		AO353_06225	0.63	+0.4
1,389,516	+		AO353_06225	0.63	-0.1
1,389,516	+		AO353_06225	0.63	-0.3
1,389,516	+		AO353_06225	0.63	+0.5
1,389,516	+		AO353_06225	0.63	-0.7
1,389,517	-		AO353_06225	0.63	-0.6
1,389,517	-		AO353_06225	0.63	+0.5
1,389,661	-		AO353_06225	0.72	-0.8
1,389,744	+		AO353_06225	0.76	-1.3
1,389,744	+		AO353_06225	0.76	-1.2
1,389,744	+		AO353_06225	0.76	-0.1
1,389,744	+		AO353_06225	0.76	-0.9
1,389,744	+		AO353_06225	0.76	+1.1
1,389,745	-		AO353_06225	0.76	+0.1
1,389,745	-		AO353_06225	0.76	-1.1
1,389,745	-		AO353_06225	0.76	-0.1
1,389,745	-		AO353_06225	0.76	+0.7
1,389,801	+		AO353_06225	0.79	+0.1
1,389,801	+		AO353_06225	0.79	-2.1
1,389,801	+		AO353_06225	0.79	-1.0
1,389,801	+		AO353_06225	0.79	+0.7
1,389,801	+		AO353_06225	0.79	+0.7
1,389,801	+		AO353_06225	0.79	-1.9
1,389,801	+		AO353_06225	0.79	+1.4
1,389,801	+		AO353_06225	0.79	+1.9
1,389,801	+		AO353_06225	0.79	+0.4
1,389,802	-		AO353_06225	0.79	-1.3
1,389,802	-		AO353_06225	0.79	-0.5
1,389,802	-		AO353_06225	0.79	-0.1
1,389,802	-		AO353_06225	0.79	+0.2
1,389,802	-		AO353_06225	0.79	+0.1
1,389,802	-		AO353_06225	0.79	-0.6
1,389,802	-		AO353_06225	0.79	-1.2
1,389,802	-		AO353_06225	0.79	+1.7
1,389,802	-		AO353_06225	0.79	-1.5
1,389,802	-		AO353_06225	0.79	+1.2
1,389,802	-		AO353_06225	0.79	+0.2
1,389,873	+		AO353_06225	0.83	-2.1
1,389,873	+		AO353_06225	0.83	+0.8
1,389,874	-		AO353_06225	0.84	+1.0
1,389,874	-		AO353_06225	0.84	+0.5
1,389,874	-		AO353_06225	0.84	-0.6
1,389,943	+		AO353_06225	0.87	-0.8
1,389,944	-		AO353_06225	0.87	-1.3
1,389,978	+		AO353_06225	0.89	-0.3
1,389,978	+		AO353_06225	0.89	-0.7
1,389,978	+		AO353_06225	0.89	+0.3
1,389,978	+		AO353_06225	0.89	-0.2
1,390,065	+				-1.3
1,390,070	-				-0.3
1,390,070	-				+0.8
1,390,070	-				+1.2
1,390,070	-				+0.2
1,390,070	-				-0.4
1,390,082	+				-0.9
1,390,083	-				-0.6
1,390,083	-				-1.4
1,390,083	-				+0.1
1,390,083	-				-1.0
1,390,101	+				+1.3
1,390,224	+				+0.8
1,390,224	+				+1.4
1,390,224	+				-0.6
1,390,224	+				+0.0
1,390,225	-				+0.0
1,390,225	-				+0.7
1,390,225	-				+1.0
1,390,225	-				+1.0
1,390,234	+				-0.9
1,390,243	+				-0.7
1,390,243	+				+1.2
1,390,243	+				-0.1
1,390,244	-				-0.7
1,390,301	+				+1.5
1,390,302	-				-1.6
1,390,323	+				+0.2
1,390,324	-				-0.3
1,390,324	-				-0.6
1,390,324	-				-0.8
1,390,324	-				+1.0
1,390,667	+		AO353_06230	0.38	-1.1
1,390,667	+		AO353_06230	0.38	+1.8
1,390,668	-		AO353_06230	0.38	-2.2
1,390,668	-		AO353_06230	0.38	+0.6
1,390,668	-		AO353_06230	0.38	-0.2
1,390,748	+		AO353_06230	0.47	+0.9
1,390,748	+		AO353_06230	0.47	-2.1
1,390,748	+		AO353_06230	0.47	+1.2
1,390,749	-		AO353_06230	0.47	-1.8
1,390,749	-		AO353_06230	0.47	-0.5
1,390,772	+		AO353_06230	0.50	-1.5
1,390,772	+		AO353_06230	0.50	+0.2
1,390,772	+		AO353_06230	0.50	+0.1
1,390,773	-		AO353_06230	0.50	-2.1
1,390,773	-		AO353_06230	0.50	-0.7
1,390,773	-		AO353_06230	0.50	+0.2
1,390,773	-		AO353_06230	0.50	+1.0
1,390,773	-		AO353_06230	0.50	+0.2
1,390,773	-		AO353_06230	0.50	+1.2
1,390,773	-		AO353_06230	0.50	-1.5
1,390,841	+		AO353_06230	0.57	+0.4
1,390,841	+		AO353_06230	0.57	+0.2
1,390,841	+		AO353_06230	0.57	-0.1
1,390,841	+		AO353_06230	0.57	-0.7
1,390,841	+		AO353_06230	0.57	+2.9
1,390,842	-		AO353_06230	0.58	+0.7
1,390,842	-		AO353_06230	0.58	+0.7
1,390,842	-		AO353_06230	0.58	+0.3
1,390,842	-		AO353_06230	0.58	+0.7
1,390,842	-		AO353_06230	0.58	-0.0
1,390,842	-		AO353_06230	0.58	-0.3
1,390,842	-		AO353_06230	0.58	-1.0
1,390,842	-		AO353_06230	0.58	-2.5
1,390,842	-		AO353_06230	0.58	-0.5
1,390,890	+		AO353_06230	0.63	-1.1
1,390,890	+		AO353_06230	0.63	+0.3
1,391,138	-				-0.4