Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03560 and AO353_03565 overlap by 1 nucleotides AO353_03565 and AO353_03570 are separated by 14 nucleotides AO353_03570 and AO353_03575 overlap by 11 nucleotides
AO353_03560: AO353_03560 - protein TolA, at 762,025 to 763,104
_03560
AO353_03565: AO353_03565 - protein TolR, at 763,104 to 763,565
_03565
AO353_03570: AO353_03570 - protein TolQ, at 763,580 to 764,275
_03570
AO353_03575: AO353_03575 - 4-hydroxybenzoyl-CoA thioesterase, at 764,265 to 764,732
_03575
Position (kb) 763
764 Strain fitness (log2 ratio) -2
-1
0
1
2 at 763.068 kb on - strand at 763.582 kb on - strand at 763.582 kb on - strand at 763.582 kb on - strand at 763.582 kb on - strand at 763.582 kb on - strand at 763.582 kb on - strand at 764.334 kb on + strand, within AO353_03575 at 764.335 kb on - strand, within AO353_03575 at 764.335 kb on - strand, within AO353_03575 at 764.335 kb on - strand, within AO353_03575 at 764.335 kb on - strand, within AO353_03575 at 764.367 kb on - strand, within AO353_03575 at 764.367 kb on - strand, within AO353_03575 at 764.367 kb on - strand, within AO353_03575 at 764.367 kb on - strand, within AO353_03575 at 764.367 kb on - strand, within AO353_03575 at 764.367 kb on - strand, within AO353_03575 at 764.445 kb on - strand, within AO353_03575 at 764.476 kb on - strand, within AO353_03575 at 764.476 kb on - strand, within AO353_03575 at 764.476 kb on - strand, within AO353_03575 at 764.476 kb on - strand, within AO353_03575 at 764.488 kb on - strand, within AO353_03575 at 764.488 kb on - strand, within AO353_03575 at 764.525 kb on - strand, within AO353_03575
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 763,068 - -0.5 763,582 - -1.3 763,582 - -0.1 763,582 - -2.0 763,582 - -0.2 763,582 - -1.8 763,582 - +0.0 764,334 + AO353_03575 0.15 -0.4 764,335 - AO353_03575 0.15 -0.4 764,335 - AO353_03575 0.15 +0.3 764,335 - AO353_03575 0.15 -1.7 764,335 - AO353_03575 0.15 +0.3 764,367 - AO353_03575 0.22 -1.7 764,367 - AO353_03575 0.22 +0.3 764,367 - AO353_03575 0.22 +0.1 764,367 - AO353_03575 0.22 -1.6 764,367 - AO353_03575 0.22 +0.9 764,367 - AO353_03575 0.22 +0.1 764,445 - AO353_03575 0.38 +0.0 764,476 - AO353_03575 0.45 -1.5 764,476 - AO353_03575 0.45 -1.0 764,476 - AO353_03575 0.45 -0.3 764,476 - AO353_03575 0.45 -0.3 764,488 - AO353_03575 0.48 -0.6 764,488 - AO353_03575 0.48 +1.9 764,525 - AO353_03575 0.56 -0.4
Or see this region's nucleotide sequence