Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00960 and AO353_00965 are separated by 131 nucleotides AO353_00965 and AO353_00970 are separated by 392 nucleotides AO353_00970 and AO353_00975 are separated by 472 nucleotides AO353_00975 and AO353_00980 are separated by 188 nucleotides
AO353_00960: AO353_00960 - DNA-binding protein, at 216,861 to 217,187
_00960
AO353_00965: AO353_00965 - bacteriocin, at 217,319 to 217,663
_00965
AO353_00970: AO353_00970 - group II intron reverse transcriptase/maturase, at 218,056 to 219,477
_00970
AO353_00975: AO353_00975 - hypothetical protein, at 219,950 to 220,141
_00975
AO353_00980: AO353_00980 - hypothetical protein, at 220,330 to 220,650
_00980
Position (kb) 218
219
220 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 217.227 kb on + strand at 217.227 kb on + strand at 217.228 kb on - strand at 217.299 kb on + strand at 217.320 kb on + strand at 217.320 kb on + strand at 217.320 kb on + strand at 217.320 kb on + strand at 217.320 kb on + strand at 217.320 kb on + strand at 217.321 kb on - strand at 217.321 kb on - strand at 217.321 kb on - strand at 217.321 kb on - strand at 217.321 kb on - strand at 217.321 kb on - strand at 217.427 kb on + strand, within AO353_00965 at 217.655 kb on + strand at 217.691 kb on + strand at 217.691 kb on + strand at 217.691 kb on + strand at 217.692 kb on - strand at 217.692 kb on - strand at 217.692 kb on - strand at 217.692 kb on - strand at 217.709 kb on + strand at 217.709 kb on + strand at 217.709 kb on + strand at 217.709 kb on + strand at 217.709 kb on + strand at 217.710 kb on - strand at 217.710 kb on - strand at 217.775 kb on + strand at 217.775 kb on + strand at 217.775 kb on + strand at 217.775 kb on + strand at 217.776 kb on - strand at 217.776 kb on - strand at 217.776 kb on - strand at 217.776 kb on - strand at 217.777 kb on + strand at 217.777 kb on + strand at 217.777 kb on + strand at 217.777 kb on + strand at 217.777 kb on + strand at 217.778 kb on - strand at 217.778 kb on - strand at 217.778 kb on - strand at 217.778 kb on - strand at 217.778 kb on - strand at 217.870 kb on - strand at 217.870 kb on - strand at 217.911 kb on + strand at 217.992 kb on - strand at 218.031 kb on + strand at 218.031 kb on + strand at 218.031 kb on + strand at 218.036 kb on - strand at 218.036 kb on - strand at 218.036 kb on - strand at 218.036 kb on - strand at 218.394 kb on - strand, within AO353_00970 at 218.394 kb on - strand, within AO353_00970 at 218.857 kb on + strand, within AO353_00970 at 218.858 kb on - strand, within AO353_00970 at 218.858 kb on - strand, within AO353_00970 at 218.858 kb on - strand, within AO353_00970 at 218.858 kb on - strand, within AO353_00970 at 218.858 kb on - strand, within AO353_00970 at 218.858 kb on - strand, within AO353_00970 at 218.858 kb on - strand, within AO353_00970 at 218.858 kb on - strand, within AO353_00970 at 218.858 kb on - strand, within AO353_00970 at 218.858 kb on - strand, within AO353_00970 at 218.858 kb on - strand, within AO353_00970 at 218.858 kb on - strand, within AO353_00970 at 218.858 kb on - strand, within AO353_00970 at 218.861 kb on + strand at 218.861 kb on + strand, within AO353_00970 at 218.861 kb on + strand, within AO353_00970 at 218.861 kb on + strand, within AO353_00970 at 218.861 kb on + strand, within AO353_00970 at 218.861 kb on + strand, within AO353_00970 at 218.861 kb on + strand, within AO353_00970 at 218.861 kb on + strand, within AO353_00970 at 218.861 kb on + strand, within AO353_00970 at 218.861 kb on + strand, within AO353_00970 at 218.861 kb on + strand, within AO353_00970 at 219.951 kb on + strand at 219.951 kb on + strand at 219.952 kb on - strand at 219.959 kb on + strand at 219.960 kb on - strand at 219.960 kb on - strand at 220.065 kb on + strand, within AO353_00975 at 220.065 kb on + strand, within AO353_00975 at 220.065 kb on + strand, within AO353_00975 at 220.065 kb on + strand, within AO353_00975 at 220.065 kb on + strand, within AO353_00975 at 220.065 kb on + strand, within AO353_00975 at 220.065 kb on + strand, within AO353_00975 at 220.065 kb on + strand, within AO353_00975 at 220.128 kb on + strand at 220.128 kb on + strand at 220.128 kb on + strand at 220.128 kb on + strand at 220.129 kb on - strand at 220.129 kb on - strand at 220.129 kb on - strand at 220.129 kb on - strand at 220.129 kb on - strand at 220.129 kb on - strand at 220.129 kb on - strand at 220.143 kb on + strand at 220.143 kb on + strand at 220.143 kb on + strand at 220.143 kb on + strand at 220.143 kb on + strand at 220.143 kb on + strand at 220.143 kb on + strand at 220.143 kb on + strand at 220.144 kb on - strand at 220.144 kb on - strand at 220.144 kb on - strand at 220.144 kb on - strand at 220.144 kb on - strand at 220.144 kb on - strand at 220.144 kb on - strand at 220.144 kb on - strand at 220.144 kb on - strand at 220.189 kb on + strand at 220.190 kb on - strand at 220.297 kb on + strand at 220.298 kb on - strand at 220.298 kb on - strand at 220.314 kb on + strand at 220.314 kb on + strand at 220.315 kb on - strand at 220.315 kb on - strand at 220.331 kb on + strand at 220.332 kb on - strand at 220.332 kb on - strand at 220.332 kb on - strand at 220.332 kb on - strand at 220.332 kb on - strand at 220.395 kb on + strand, within AO353_00980 at 220.395 kb on + strand, within AO353_00980 at 220.396 kb on - strand, within AO353_00980 at 220.396 kb on - strand, within AO353_00980
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 217,227 + -0.1 217,227 + -0.8 217,228 - -0.3 217,299 + +0.0 217,320 + -0.0 217,320 + -0.8 217,320 + +0.2 217,320 + -1.5 217,320 + +0.6 217,320 + -0.9 217,321 - -0.1 217,321 - -0.6 217,321 - -0.8 217,321 - -1.3 217,321 - +0.6 217,321 - -0.3 217,427 + AO353_00965 0.31 -0.1 217,655 + +0.2 217,691 + +0.8 217,691 + +0.8 217,691 + -0.2 217,692 - -0.4 217,692 - +0.6 217,692 - -0.9 217,692 - +0.9 217,709 + -1.1 217,709 + -0.2 217,709 + -0.5 217,709 + -0.9 217,709 + -0.0 217,710 - -0.2 217,710 - +0.2 217,775 + -0.0 217,775 + -0.8 217,775 + +0.1 217,775 + -0.0 217,776 - +0.8 217,776 - +0.3 217,776 - +1.2 217,776 - -1.3 217,777 + -1.2 217,777 + -0.9 217,777 + -0.1 217,777 + -1.0 217,777 + +0.5 217,778 - +2.0 217,778 - -1.3 217,778 - -0.3 217,778 - +0.6 217,778 - -0.6 217,870 - -0.6 217,870 - -0.4 217,911 + +1.2 217,992 - +0.3 218,031 + -1.4 218,031 + +0.4 218,031 + -1.9 218,036 - +0.6 218,036 - -2.0 218,036 - +1.1 218,036 - -1.2 218,394 - AO353_00970 0.24 -1.2 218,394 - AO353_00970 0.24 +0.2 218,857 + AO353_00970 0.56 +0.1 218,858 - AO353_00970 0.56 +0.2 218,858 - AO353_00970 0.56 +0.7 218,858 - AO353_00970 0.56 +0.1 218,858 - AO353_00970 0.56 +0.1 218,858 - AO353_00970 0.56 +0.2 218,858 - AO353_00970 0.56 -1.0 218,858 - AO353_00970 0.56 -1.3 218,858 - AO353_00970 0.56 -1.0 218,858 - AO353_00970 0.56 -0.9 218,858 - AO353_00970 0.56 +0.1 218,858 - AO353_00970 0.56 +0.0 218,858 - AO353_00970 0.56 +0.1 218,858 - AO353_00970 0.56 -1.9 218,861 + +1.8 218,861 + AO353_00970 0.57 -0.5 218,861 + AO353_00970 0.57 -2.8 218,861 + AO353_00970 0.57 -1.9 218,861 + AO353_00970 0.57 +0.4 218,861 + AO353_00970 0.57 -1.3 218,861 + AO353_00970 0.57 -1.0 218,861 + AO353_00970 0.57 -0.5 218,861 + AO353_00970 0.57 -0.3 218,861 + AO353_00970 0.57 -0.0 218,861 + AO353_00970 0.57 -1.2 219,951 + +0.7 219,951 + -2.9 219,952 - +0.1 219,959 + -2.9 219,960 - -0.6 219,960 - -0.8 220,065 + AO353_00975 0.60 +0.8 220,065 + AO353_00975 0.60 +0.1 220,065 + AO353_00975 0.60 +1.6 220,065 + AO353_00975 0.60 +0.9 220,065 + AO353_00975 0.60 -2.1 220,065 + AO353_00975 0.60 -0.2 220,065 + AO353_00975 0.60 +0.2 220,065 + AO353_00975 0.60 +1.0 220,128 + +0.8 220,128 + -1.2 220,128 + -0.6 220,128 + +0.2 220,129 - +1.2 220,129 - -0.5 220,129 - -0.3 220,129 - +1.7 220,129 - +0.7 220,129 - -0.8 220,129 - -0.1 220,143 + -1.6 220,143 + +0.9 220,143 + -0.1 220,143 + +0.4 220,143 + +0.7 220,143 + -0.8 220,143 + -0.7 220,143 + +0.6 220,144 - +0.4 220,144 - -2.0 220,144 - +0.6 220,144 - +1.5 220,144 - -0.8 220,144 - +0.4 220,144 - -2.1 220,144 - +0.3 220,144 - -0.8 220,189 + +1.0 220,190 - -0.4 220,297 + -0.8 220,298 - -0.4 220,298 - +0.1 220,314 + -0.2 220,314 + -0.4 220,315 - +0.3 220,315 - -0.2 220,331 + +0.7 220,332 - +0.2 220,332 - -0.1 220,332 - -1.1 220,332 - -0.3 220,332 - +0.6 220,395 + AO353_00980 0.20 -1.6 220,395 + AO353_00980 0.20 -0.7 220,396 - AO353_00980 0.21 -0.2 220,396 - AO353_00980 0.21 +0.8
Or see this region's nucleotide sequence