Experiment: N-Acetyl-D-glucosamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0038 and BT0039 are separated by 285 nucleotides BT0039 and BT0040 are separated by 60 nucleotides BT0040 and BT0041 overlap by 4 nucleotides
BT0038: BT0038 - hypothetical protein (NCBI ptt file), at 35,266 to 35,703
BT0038
BT0039: BT0039 - conserved hypothetical protein (NCBI ptt file), at 35,989 to 36,417
BT0039
BT0040: BT0040 - hypothetical protein (NCBI ptt file), at 36,478 to 38,019
BT0040
BT0041: BT0041 - F420H2:quinone oxidoreductase (NCBI ptt file), at 38,016 to 39,218
BT0041
Position (kb) 36
37
38
39 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 35.525 kb on - strand, within BT0038 at 35.562 kb on - strand, within BT0038 at 35.573 kb on + strand, within BT0038 at 35.580 kb on - strand, within BT0038 at 35.625 kb on + strand, within BT0038 at 35.629 kb on - strand, within BT0038 at 35.661 kb on + strand at 35.747 kb on + strand at 35.758 kb on + strand at 35.759 kb on - strand at 35.804 kb on + strand at 35.827 kb on + strand at 35.836 kb on + strand at 35.874 kb on + strand at 35.882 kb on - strand at 35.997 kb on - strand at 36.310 kb on - strand, within BT0039 at 36.323 kb on + strand, within BT0039 at 36.324 kb on - strand, within BT0039 at 36.324 kb on - strand, within BT0039 at 36.324 kb on - strand, within BT0039 at 36.341 kb on - strand, within BT0039 at 36.415 kb on + strand at 36.449 kb on - strand at 36.449 kb on - strand at 36.469 kb on + strand at 36.469 kb on + strand at 36.470 kb on - strand at 36.532 kb on + strand at 36.533 kb on - strand at 36.541 kb on - strand at 36.541 kb on - strand at 36.571 kb on - strand at 36.620 kb on - strand at 36.620 kb on - strand at 36.622 kb on - strand at 36.683 kb on + strand, within BT0040 at 36.770 kb on + strand, within BT0040 at 36.771 kb on - strand, within BT0040 at 36.939 kb on - strand, within BT0040 at 37.017 kb on - strand, within BT0040 at 37.050 kb on - strand, within BT0040 at 37.055 kb on - strand, within BT0040 at 37.254 kb on + strand, within BT0040 at 37.304 kb on + strand at 37.304 kb on + strand, within BT0040 at 37.395 kb on + strand, within BT0040 at 37.396 kb on - strand, within BT0040 at 37.396 kb on - strand, within BT0040 at 37.436 kb on - strand, within BT0040 at 37.437 kb on + strand, within BT0040 at 37.438 kb on - strand, within BT0040 at 37.438 kb on - strand, within BT0040 at 37.523 kb on + strand, within BT0040 at 37.563 kb on + strand, within BT0040 at 37.563 kb on + strand, within BT0040 at 37.618 kb on + strand, within BT0040 at 37.666 kb on + strand, within BT0040 at 37.794 kb on + strand, within BT0040 at 37.794 kb on + strand, within BT0040 at 37.796 kb on + strand, within BT0040 at 37.797 kb on - strand, within BT0040 at 37.813 kb on - strand, within BT0040 at 37.854 kb on - strand, within BT0040 at 37.893 kb on + strand at 37.894 kb on - strand at 38.132 kb on - strand at 38.135 kb on + strand at 38.136 kb on - strand at 38.317 kb on + strand, within BT0041 at 38.366 kb on + strand, within BT0041 at 38.366 kb on + strand, within BT0041 at 38.414 kb on - strand, within BT0041 at 38.472 kb on - strand, within BT0041 at 38.528 kb on + strand, within BT0041 at 38.535 kb on + strand, within BT0041 at 38.656 kb on + strand, within BT0041 at 38.688 kb on - strand, within BT0041 at 38.690 kb on - strand, within BT0041 at 38.801 kb on + strand, within BT0041 at 38.804 kb on - strand, within BT0041 at 38.821 kb on - strand, within BT0041 at 38.823 kb on - strand, within BT0041 at 38.823 kb on - strand, within BT0041 at 38.903 kb on + strand, within BT0041 at 38.904 kb on - strand, within BT0041 at 38.982 kb on - strand, within BT0041 at 38.984 kb on - strand, within BT0041 at 38.984 kb on - strand, within BT0041 at 38.984 kb on - strand, within BT0041 at 39.010 kb on + strand, within BT0041
Per-strain Table
Position Strand Gene LocusTag Fraction N-Acetyl-D-glucosamine (N) remove 35,525 - BT0038 0.59 -0.9 35,562 - BT0038 0.68 -0.0 35,573 + BT0038 0.70 -1.0 35,580 - BT0038 0.72 +0.5 35,625 + BT0038 0.82 -1.3 35,629 - BT0038 0.83 -1.6 35,661 + -0.4 35,747 + -0.6 35,758 + +1.9 35,759 - -1.1 35,804 + +2.1 35,827 + -0.3 35,836 + +1.5 35,874 + -0.3 35,882 - -1.5 35,997 - -1.4 36,310 - BT0039 0.75 +0.5 36,323 + BT0039 0.78 -0.7 36,324 - BT0039 0.78 -0.6 36,324 - BT0039 0.78 -0.2 36,324 - BT0039 0.78 -0.6 36,341 - BT0039 0.82 -1.4 36,415 + -0.0 36,449 - +1.5 36,449 - -0.0 36,469 + -1.0 36,469 + -0.7 36,470 - +1.5 36,532 + +0.2 36,533 - -1.3 36,541 - -1.3 36,541 - +0.2 36,571 - -1.8 36,620 - -0.8 36,620 - -0.4 36,622 - -1.3 36,683 + BT0040 0.13 -0.8 36,770 + BT0040 0.19 -0.3 36,771 - BT0040 0.19 -2.5 36,939 - BT0040 0.30 -0.5 37,017 - BT0040 0.35 -2.9 37,050 - BT0040 0.37 +0.2 37,055 - BT0040 0.37 -1.0 37,254 + BT0040 0.50 -1.0 37,304 + +0.8 37,304 + BT0040 0.54 -0.8 37,395 + BT0040 0.59 -1.6 37,396 - BT0040 0.60 -1.5 37,396 - BT0040 0.60 -1.9 37,436 - BT0040 0.62 -0.8 37,437 + BT0040 0.62 -0.0 37,438 - BT0040 0.62 -0.9 37,438 - BT0040 0.62 -1.5 37,523 + BT0040 0.68 +1.0 37,563 + BT0040 0.70 -0.8 37,563 + BT0040 0.70 -1.4 37,618 + BT0040 0.74 -0.0 37,666 + BT0040 0.77 +1.0 37,794 + BT0040 0.85 -0.5 37,794 + BT0040 0.85 -1.3 37,796 + BT0040 0.85 -0.5 37,797 - BT0040 0.86 -2.1 37,813 - BT0040 0.87 -0.0 37,854 - BT0040 0.89 -0.8 37,893 + -0.5 37,894 - +1.0 38,132 - -0.5 38,135 + +0.8 38,136 - -0.5 38,317 + BT0041 0.25 +1.4 38,366 + BT0041 0.29 -1.5 38,366 + BT0041 0.29 +0.8 38,414 - BT0041 0.33 -0.7 38,472 - BT0041 0.38 -0.3 38,528 + BT0041 0.43 -2.2 38,535 + BT0041 0.43 -1.6 38,656 + BT0041 0.53 -0.0 38,688 - BT0041 0.56 +1.0 38,690 - BT0041 0.56 -1.8 38,801 + BT0041 0.65 -0.0 38,804 - BT0041 0.66 -0.5 38,821 - BT0041 0.67 -1.8 38,823 - BT0041 0.67 -2.5 38,823 - BT0041 0.67 +0.2 38,903 + BT0041 0.74 -0.5 38,904 - BT0041 0.74 -1.5 38,982 - BT0041 0.80 -1.0 38,984 - BT0041 0.80 -1.6 38,984 - BT0041 0.80 -1.9 38,984 - BT0041 0.80 -0.5 39,010 + BT0041 0.83 -0.5
Or see this region's nucleotide sequence