Strain Fitness in Methanococcus maripaludis S2 around MMP_RS09030

Experiment: Formate with Bacitracin 15.6 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07155 and MMP_RS09030 are separated by 107 nucleotidesMMP_RS09030 and MMP_RS07160 are separated by 133 nucleotides MMP_RS07155: MMP_RS07155 - MFS transporter, at 1,368,288 to 1,369,436 _RS07155 MMP_RS09030: MMP_RS09030 - hypothetical protein, at 1,369,544 to 1,369,714 _RS09030 MMP_RS07160: MMP_RS07160 - aspartate-semialdehyde dehydrogenase, at 1,369,848 to 1,370,894 _RS07160 Position (kb) 1369 1370Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1368.551 kb on + strand, within MMP_RS07155at 1368.745 kb on - strand, within MMP_RS07155at 1368.784 kb on + strand, within MMP_RS07155at 1368.923 kb on - strand, within MMP_RS07155at 1368.944 kb on + strand, within MMP_RS07155at 1368.976 kb on + strand, within MMP_RS07155at 1369.018 kb on - strand, within MMP_RS07155at 1369.316 kb on - strand, within MMP_RS07155at 1369.409 kb on + strandat 1369.431 kb on - strandat 1369.455 kb on - strandat 1369.456 kb on + strandat 1369.459 kb on - strandat 1369.459 kb on - strandat 1369.479 kb on + strandat 1369.491 kb on - strandat 1369.494 kb on - strandat 1369.495 kb on + strandat 1369.495 kb on + strandat 1369.571 kb on + strand, within MMP_RS09030at 1369.646 kb on - strand, within MMP_RS09030at 1369.647 kb on + strand, within MMP_RS09030at 1369.647 kb on + strand, within MMP_RS09030at 1369.658 kb on - strand, within MMP_RS09030at 1369.659 kb on + strand, within MMP_RS09030at 1369.666 kb on + strand, within MMP_RS09030at 1369.669 kb on - strand, within MMP_RS09030at 1369.669 kb on - strand, within MMP_RS09030at 1369.669 kb on - strand, within MMP_RS09030at 1369.681 kb on - strand, within MMP_RS09030at 1369.728 kb on - strandat 1369.729 kb on + strandat 1369.729 kb on + strandat 1369.731 kb on - strandat 1369.736 kb on - strandat 1369.736 kb on - strandat 1369.789 kb on - strandat 1369.790 kb on + strandat 1369.790 kb on + strandat 1369.911 kb on + strandat 1369.934 kb on + strandat 1370.154 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate with Bacitracin 15.6 uM
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1,368,551 + MMP_RS07155 0.23 -1.0
1,368,745 - MMP_RS07155 0.40 +0.8
1,368,784 + MMP_RS07155 0.43 -1.1
1,368,923 - MMP_RS07155 0.55 +0.2
1,368,944 + MMP_RS07155 0.57 -0.6
1,368,976 + MMP_RS07155 0.60 +1.0
1,369,018 - MMP_RS07155 0.64 -0.4
1,369,316 - MMP_RS07155 0.89 -0.2
1,369,409 + +0.4
1,369,431 - -1.0
1,369,455 - -0.4
1,369,456 + -1.2
1,369,459 - -0.0
1,369,459 - -1.1
1,369,479 + -1.8
1,369,491 - -1.0
1,369,494 - +0.3
1,369,495 + -0.4
1,369,495 + +0.9
1,369,571 + MMP_RS09030 0.16 -0.2
1,369,646 - MMP_RS09030 0.60 -0.3
1,369,647 + MMP_RS09030 0.60 -1.6
1,369,647 + MMP_RS09030 0.60 +0.4
1,369,658 - MMP_RS09030 0.67 -1.0
1,369,659 + MMP_RS09030 0.67 -1.4
1,369,666 + MMP_RS09030 0.71 +0.2
1,369,669 - MMP_RS09030 0.73 -1.4
1,369,669 - MMP_RS09030 0.73 +0.2
1,369,669 - MMP_RS09030 0.73 -1.2
1,369,681 - MMP_RS09030 0.80 -3.5
1,369,728 - -1.1
1,369,729 + +0.2
1,369,729 + -1.0
1,369,731 - -0.5
1,369,736 - -1.7
1,369,736 - +1.8
1,369,789 - -2.1
1,369,790 + -0.5
1,369,790 + -0.2
1,369,911 + +0.6
1,369,934 + +2.0
1,370,154 + +2.0

Or see this region's nucleotide sequence