Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08585

Experiment: Formate with Bacitracin 15.6 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS08575 and MMP_RS08580 are separated by 305 nucleotidesMMP_RS08580 and MMP_RS08585 are separated by 37 nucleotidesMMP_RS08585 and MMP_RS08590 are separated by 32 nucleotidesMMP_RS08590 and MMP_RS08595 are separated by 10 nucleotides MMP_RS08575: MMP_RS08575 - hypothetical protein, at 1,607,978 to 1,609,657 _RS08575 MMP_RS08580: MMP_RS08580 - flagellin, at 1,609,963 to 1,610,598 _RS08580 MMP_RS08585: MMP_RS08585 - flagellin, at 1,610,636 to 1,611,286 _RS08585 MMP_RS08590: MMP_RS08590 - flagellin, at 1,611,319 to 1,611,951 _RS08590 MMP_RS08595: MMP_RS08595 - flagellar protein C, at 1,611,962 to 1,612,522 _RS08595 Position (kb) 1610 1611 1612Strain fitness (log2 ratio) -3 -2 -1 0 1at 1609.652 kb on - strandat 1609.658 kb on - strandat 1609.672 kb on - strandat 1609.730 kb on - strandat 1609.835 kb on - strandat 1609.918 kb on + strandat 1610.147 kb on - strand, within MMP_RS08580at 1610.379 kb on + strand, within MMP_RS08580at 1610.444 kb on - strand, within MMP_RS08580at 1610.445 kb on + strand, within MMP_RS08580at 1610.553 kb on - strandat 1610.569 kb on - strandat 1610.889 kb on + strand, within MMP_RS08585at 1610.889 kb on + strand, within MMP_RS08585at 1610.889 kb on + strand, within MMP_RS08585at 1610.893 kb on + strand, within MMP_RS08585at 1610.974 kb on - strand, within MMP_RS08585at 1610.975 kb on + strand, within MMP_RS08585at 1610.979 kb on + strand, within MMP_RS08585at 1610.994 kb on + strand, within MMP_RS08585at 1611.003 kb on - strand, within MMP_RS08585at 1611.023 kb on - strand, within MMP_RS08585at 1611.031 kb on - strand, within MMP_RS08585at 1611.078 kb on - strand, within MMP_RS08585at 1611.145 kb on + strand, within MMP_RS08585at 1611.160 kb on + strand, within MMP_RS08585at 1611.233 kb on + strandat 1611.279 kb on - strandat 1611.280 kb on + strandat 1611.284 kb on - strandat 1611.298 kb on + strandat 1611.424 kb on + strand, within MMP_RS08590at 1611.500 kb on - strand, within MMP_RS08590at 1611.541 kb on + strand, within MMP_RS08590at 1611.699 kb on - strand, within MMP_RS08590at 1611.816 kb on + strand, within MMP_RS08590at 1611.818 kb on + strand, within MMP_RS08590at 1611.822 kb on - strand, within MMP_RS08590at 1611.920 kb on - strandat 1611.958 kb on - strandat 1611.962 kb on + strandat 1611.994 kb on + strandat 1612.250 kb on + strand, within MMP_RS08595

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Formate with Bacitracin 15.6 uM
remove
1,609,652 - -0.4
1,609,658 - -0.5
1,609,672 - -0.5
1,609,730 - +0.7
1,609,835 - -0.5
1,609,918 + -0.6
1,610,147 - MMP_RS08580 0.29 -0.6
1,610,379 + MMP_RS08580 0.65 -1.1
1,610,444 - MMP_RS08580 0.76 +0.8
1,610,445 + MMP_RS08580 0.76 -0.7
1,610,553 - +0.1
1,610,569 - -2.1
1,610,889 + MMP_RS08585 0.39 -2.2
1,610,889 + MMP_RS08585 0.39 -3.5
1,610,889 + MMP_RS08585 0.39 -1.0
1,610,893 + MMP_RS08585 0.39 +0.3
1,610,974 - MMP_RS08585 0.52 -0.2
1,610,975 + MMP_RS08585 0.52 -2.2
1,610,979 + MMP_RS08585 0.53 -0.8
1,610,994 + MMP_RS08585 0.55 -1.5
1,611,003 - MMP_RS08585 0.56 -0.5
1,611,023 - MMP_RS08585 0.59 -1.9
1,611,031 - MMP_RS08585 0.61 -0.4
1,611,078 - MMP_RS08585 0.68 +0.4
1,611,145 + MMP_RS08585 0.78 -2.0
1,611,160 + MMP_RS08585 0.80 +1.4
1,611,233 + -1.0
1,611,279 - -0.4
1,611,280 + -0.0
1,611,284 - +0.4
1,611,298 + -0.3
1,611,424 + MMP_RS08590 0.17 +0.0
1,611,500 - MMP_RS08590 0.29 -0.8
1,611,541 + MMP_RS08590 0.35 +0.9
1,611,699 - MMP_RS08590 0.60 +0.3
1,611,816 + MMP_RS08590 0.79 -0.4
1,611,818 + MMP_RS08590 0.79 +0.2
1,611,822 - MMP_RS08590 0.79 +0.4
1,611,920 - +0.7
1,611,958 - -0.2
1,611,962 + +1.4
1,611,994 + +0.3
1,612,250 + MMP_RS08595 0.51 +1.2

Or see this region's nucleotide sequence