Experiment: Formate with Bacitracin 15.6 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04725 and MMP_RS04730 are separated by 43 nucleotides MMP_RS04730 and MMP_RS04735 are separated by 75 nucleotides MMP_RS04735 and MMP_RS04740 are separated by 41 nucleotides MMP_RS04740 and MMP_RS04745 are separated by 18 nucleotides MMP_RS04745 and MMP_RS04750 are separated by 84 nucleotides
MMP_RS04725: MMP_RS04725 - hypothetical protein, at 902,427 to 902,855
_RS04725
MMP_RS04730: MMP_RS04730 - flavodoxin family protein, at 902,899 to 903,480
_RS04730
MMP_RS04735: MMP_RS04735 - tautomerase family protein, at 903,556 to 903,750
_RS04735
MMP_RS04740: MMP_RS04740 - DUF473 domain-containing protein, at 903,792 to 904,169
_RS04740
MMP_RS04745: MMP_RS04745 - proteasome assembly chaperone family protein, at 904,188 to 904,895
_RS04745
MMP_RS04750: MMP_RS04750 - TIGR00454 family protein, at 904,980 to 905,588
_RS04750
Position (kb) 903
904
905 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9
10
11
12 at 902.817 kb on - strand at 902.873 kb on - strand at 902.873 kb on - strand at 902.897 kb on - strand at 902.897 kb on - strand at 902.897 kb on - strand at 902.898 kb on + strand at 902.898 kb on + strand at 902.900 kb on - strand at 902.902 kb on - strand at 902.903 kb on + strand at 902.903 kb on + strand at 902.943 kb on - strand at 903.018 kb on + strand, within MMP_RS04730 at 903.088 kb on - strand, within MMP_RS04730 at 903.094 kb on + strand, within MMP_RS04730 at 903.160 kb on + strand, within MMP_RS04730 at 903.171 kb on - strand, within MMP_RS04730 at 903.171 kb on - strand, within MMP_RS04730 at 903.228 kb on + strand, within MMP_RS04730 at 903.243 kb on - strand, within MMP_RS04730 at 903.244 kb on + strand, within MMP_RS04730 at 903.247 kb on - strand, within MMP_RS04730 at 903.248 kb on + strand, within MMP_RS04730 at 903.248 kb on + strand, within MMP_RS04730 at 903.248 kb on + strand, within MMP_RS04730 at 903.248 kb on + strand, within MMP_RS04730 at 903.250 kb on + strand, within MMP_RS04730 at 903.295 kb on - strand, within MMP_RS04730 at 903.301 kb on + strand, within MMP_RS04730 at 903.422 kb on + strand at 903.501 kb on - strand at 903.501 kb on - strand at 903.501 kb on - strand at 903.502 kb on + strand at 903.502 kb on + strand at 903.502 kb on + strand at 903.542 kb on - strand at 903.542 kb on - strand at 903.578 kb on + strand, within MMP_RS04735 at 903.632 kb on + strand, within MMP_RS04735 at 903.661 kb on - strand, within MMP_RS04735 at 903.661 kb on - strand, within MMP_RS04735 at 903.662 kb on + strand, within MMP_RS04735 at 903.793 kb on - strand at 903.794 kb on + strand at 903.804 kb on - strand at 903.909 kb on - strand, within MMP_RS04740 at 903.919 kb on + strand, within MMP_RS04740 at 903.954 kb on + strand, within MMP_RS04740 at 903.958 kb on + strand, within MMP_RS04740 at 903.960 kb on + strand, within MMP_RS04740 at 904.189 kb on - strand at 904.189 kb on - strand at 904.194 kb on + strand at 904.194 kb on + strand at 904.194 kb on + strand at 904.195 kb on - strand at 904.195 kb on - strand at 904.195 kb on - strand at 904.195 kb on - strand at 904.195 kb on - strand at 904.195 kb on - strand at 904.195 kb on - strand at 904.195 kb on - strand at 904.195 kb on - strand at 904.195 kb on - strand at 904.195 kb on - strand at 904.196 kb on + strand at 904.196 kb on + strand at 904.196 kb on + strand at 904.196 kb on + strand at 904.196 kb on + strand at 904.196 kb on + strand at 904.196 kb on + strand at 904.196 kb on + strand at 904.196 kb on + strand at 904.199 kb on - strand at 904.200 kb on + strand at 904.392 kb on - strand, within MMP_RS04745 at 904.633 kb on + strand, within MMP_RS04745 at 904.635 kb on - strand, within MMP_RS04745 at 904.635 kb on - strand, within MMP_RS04745 at 904.636 kb on + strand, within MMP_RS04745 at 904.653 kb on - strand, within MMP_RS04745 at 904.653 kb on - strand, within MMP_RS04745 at 904.653 kb on - strand, within MMP_RS04745 at 904.654 kb on + strand, within MMP_RS04745 at 904.671 kb on - strand, within MMP_RS04745 at 904.672 kb on + strand, within MMP_RS04745 at 904.674 kb on - strand, within MMP_RS04745 at 904.691 kb on + strand, within MMP_RS04745 at 904.734 kb on - strand, within MMP_RS04745 at 904.734 kb on - strand, within MMP_RS04745 at 904.735 kb on + strand, within MMP_RS04745 at 904.763 kb on + strand, within MMP_RS04745 at 904.772 kb on + strand, within MMP_RS04745 at 904.801 kb on - strand, within MMP_RS04745 at 904.802 kb on + strand, within MMP_RS04745 at 904.849 kb on + strand at 904.888 kb on - strand at 904.888 kb on - strand at 904.926 kb on - strand at 904.945 kb on + strand at 904.946 kb on - strand at 904.948 kb on - strand at 904.948 kb on - strand at 904.948 kb on - strand at 904.948 kb on - strand at 904.949 kb on + strand at 904.959 kb on + strand at 905.116 kb on - strand at 905.117 kb on + strand at 905.119 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with Bacitracin 15.6 uM remove 902,817 - -1.2 902,873 - +0.9 902,873 - -0.3 902,897 - -2.3 902,897 - -0.7 902,897 - +2.7 902,898 + +0.9 902,898 + -1.0 902,900 - +0.6 902,902 - +0.4 902,903 + -0.8 902,903 + -0.7 902,943 - +0.2 903,018 + MMP_RS04730 0.20 -0.2 903,088 - MMP_RS04730 0.32 -1.6 903,094 + MMP_RS04730 0.34 -0.7 903,160 + MMP_RS04730 0.45 -0.6 903,171 - MMP_RS04730 0.47 -0.4 903,171 - MMP_RS04730 0.47 -3.0 903,228 + MMP_RS04730 0.57 +0.7 903,243 - MMP_RS04730 0.59 +0.4 903,244 + MMP_RS04730 0.59 -1.1 903,247 - MMP_RS04730 0.60 +0.6 903,248 + MMP_RS04730 0.60 -1.0 903,248 + MMP_RS04730 0.60 -0.1 903,248 + MMP_RS04730 0.60 -2.4 903,248 + MMP_RS04730 0.60 +0.5 903,250 + MMP_RS04730 0.60 -0.3 903,295 - MMP_RS04730 0.68 +0.0 903,301 + MMP_RS04730 0.69 -0.7 903,422 + +0.1 903,501 - -1.6 903,501 - -1.1 903,501 - -1.1 903,502 + +1.3 903,502 + -3.1 903,502 + +0.4 903,542 - +0.1 903,542 - -0.4 903,578 + MMP_RS04735 0.11 +0.4 903,632 + MMP_RS04735 0.39 -0.8 903,661 - MMP_RS04735 0.54 -1.2 903,661 - MMP_RS04735 0.54 +0.0 903,662 + MMP_RS04735 0.54 +0.7 903,793 - +0.2 903,794 + -1.5 903,804 - -1.0 903,909 - MMP_RS04740 0.31 -0.6 903,919 + MMP_RS04740 0.34 +0.2 903,954 + MMP_RS04740 0.43 -0.5 903,958 + MMP_RS04740 0.44 -1.1 903,960 + MMP_RS04740 0.44 -2.1 904,189 - -0.1 904,189 - -0.3 904,194 + -0.6 904,194 + +0.1 904,194 + +0.0 904,195 - +0.4 904,195 - -0.5 904,195 - -2.0 904,195 - -0.3 904,195 - +0.7 904,195 - -0.1 904,195 - -0.0 904,195 - -1.2 904,195 - -0.3 904,195 - +0.7 904,195 - -2.0 904,196 + +0.3 904,196 + +0.9 904,196 + +2.1 904,196 + +0.8 904,196 + +0.9 904,196 + +1.3 904,196 + -1.5 904,196 + +0.0 904,196 + -1.5 904,199 - +1.1 904,200 + +0.7 904,392 - MMP_RS04745 0.29 -1.8 904,633 + MMP_RS04745 0.63 -0.8 904,635 - MMP_RS04745 0.63 -0.8 904,635 - MMP_RS04745 0.63 +0.3 904,636 + MMP_RS04745 0.63 +0.1 904,653 - MMP_RS04745 0.66 +0.2 904,653 - MMP_RS04745 0.66 +0.4 904,653 - MMP_RS04745 0.66 -1.2 904,654 + MMP_RS04745 0.66 -1.1 904,671 - MMP_RS04745 0.68 -0.6 904,672 + MMP_RS04745 0.68 -0.8 904,674 - MMP_RS04745 0.69 +1.2 904,691 + MMP_RS04745 0.71 +0.3 904,734 - MMP_RS04745 0.77 +12.0 904,734 - MMP_RS04745 0.77 +0.1 904,735 + MMP_RS04745 0.77 +0.2 904,763 + MMP_RS04745 0.81 +1.2 904,772 + MMP_RS04745 0.82 -0.7 904,801 - MMP_RS04745 0.87 +1.1 904,802 + MMP_RS04745 0.87 -0.6 904,849 + -1.6 904,888 - +0.5 904,888 - -0.3 904,926 - -0.4 904,945 + +0.8 904,946 - +2.3 904,948 - +1.4 904,948 - +2.1 904,948 - +3.1 904,948 - +1.9 904,949 + +1.8 904,959 + +3.1 905,116 - +4.4 905,117 + +3.8 905,119 + +3.2
Or see this region's nucleotide sequence