Experiment: Formate with Bacitracin 15.6 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03325 and MMP_RS03330 are separated by 131 nucleotides MMP_RS03330 and MMP_RS03335 are separated by 153 nucleotides MMP_RS03335 and MMP_RS03340 are separated by 2 nucleotides MMP_RS03340 and MMP_RS03345 are separated by 213 nucleotides
MMP_RS03325: MMP_RS03325 - hypothetical protein, at 624,435 to 625,601
_RS03325
MMP_RS03330: MMP_RS03330 - rubrerythrin family protein, at 625,733 to 626,323
_RS03330
MMP_RS03335: MMP_RS03335 - ABC transporter permease, at 626,477 to 627,670
_RS03335
MMP_RS03340: MMP_RS03340 - ABC transporter ATP-binding protein, at 627,673 to 628,398
_RS03340
MMP_RS03345: MMP_RS03345 - hypothetical protein, at 628,612 to 629,844
_RS03345
Position (kb) 626
627
628 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 625.496 kb on + strand at 625.574 kb on - strand at 625.645 kb on - strand at 625.668 kb on - strand at 625.669 kb on + strand at 625.669 kb on + strand at 625.689 kb on - strand at 625.697 kb on + strand at 625.795 kb on - strand, within MMP_RS03330 at 625.801 kb on - strand, within MMP_RS03330 at 625.801 kb on - strand, within MMP_RS03330 at 625.802 kb on + strand, within MMP_RS03330 at 625.802 kb on + strand, within MMP_RS03330 at 625.808 kb on + strand, within MMP_RS03330 at 625.808 kb on + strand, within MMP_RS03330 at 625.808 kb on + strand, within MMP_RS03330 at 625.812 kb on - strand, within MMP_RS03330 at 625.812 kb on - strand, within MMP_RS03330 at 625.812 kb on - strand, within MMP_RS03330 at 625.812 kb on - strand, within MMP_RS03330 at 625.812 kb on - strand, within MMP_RS03330 at 625.812 kb on - strand, within MMP_RS03330 at 625.813 kb on + strand, within MMP_RS03330 at 625.813 kb on + strand, within MMP_RS03330 at 625.813 kb on + strand, within MMP_RS03330 at 625.813 kb on + strand, within MMP_RS03330 at 625.815 kb on + strand, within MMP_RS03330 at 625.815 kb on + strand, within MMP_RS03330 at 625.860 kb on - strand, within MMP_RS03330 at 625.909 kb on - strand, within MMP_RS03330 at 625.915 kb on + strand, within MMP_RS03330 at 625.986 kb on + strand, within MMP_RS03330 at 625.993 kb on - strand, within MMP_RS03330 at 625.993 kb on - strand, within MMP_RS03330 at 625.994 kb on + strand, within MMP_RS03330 at 626.088 kb on - strand, within MMP_RS03330 at 626.110 kb on + strand, within MMP_RS03330 at 626.208 kb on - strand, within MMP_RS03330 at 626.209 kb on + strand, within MMP_RS03330 at 626.242 kb on + strand, within MMP_RS03330 at 626.294 kb on - strand at 626.319 kb on + strand at 626.375 kb on + strand at 626.396 kb on + strand at 626.551 kb on + strand at 626.563 kb on - strand at 626.581 kb on + strand at 626.763 kb on - strand, within MMP_RS03335 at 626.764 kb on + strand, within MMP_RS03335 at 626.796 kb on + strand, within MMP_RS03335 at 627.036 kb on - strand, within MMP_RS03335 at 627.037 kb on + strand, within MMP_RS03335 at 627.055 kb on - strand, within MMP_RS03335 at 627.136 kb on + strand, within MMP_RS03335 at 627.253 kb on - strand, within MMP_RS03335 at 627.354 kb on - strand, within MMP_RS03335 at 627.475 kb on + strand, within MMP_RS03335 at 627.653 kb on + strand at 627.726 kb on - strand at 627.971 kb on - strand, within MMP_RS03340 at 628.394 kb on - strand at 628.441 kb on + strand at 628.506 kb on - strand at 628.544 kb on - strand at 628.551 kb on - strand at 628.559 kb on - strand at 628.559 kb on - strand at 628.561 kb on - strand at 628.579 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with Bacitracin 15.6 uM remove 625,496 + -1.3 625,574 - -0.5 625,645 - -0.5 625,668 - +0.5 625,669 + -2.3 625,669 + -1.3 625,689 - -0.7 625,697 + +0.1 625,795 - MMP_RS03330 0.10 +0.9 625,801 - MMP_RS03330 0.12 -0.9 625,801 - MMP_RS03330 0.12 -0.8 625,802 + MMP_RS03330 0.12 -2.5 625,802 + MMP_RS03330 0.12 -1.1 625,808 + MMP_RS03330 0.13 +0.6 625,808 + MMP_RS03330 0.13 +0.2 625,808 + MMP_RS03330 0.13 +0.3 625,812 - MMP_RS03330 0.13 +1.1 625,812 - MMP_RS03330 0.13 -0.5 625,812 - MMP_RS03330 0.13 +1.3 625,812 - MMP_RS03330 0.13 -3.3 625,812 - MMP_RS03330 0.13 -1.8 625,812 - MMP_RS03330 0.13 +2.1 625,813 + MMP_RS03330 0.14 -1.2 625,813 + MMP_RS03330 0.14 +0.5 625,813 + MMP_RS03330 0.14 +0.1 625,813 + MMP_RS03330 0.14 -1.6 625,815 + MMP_RS03330 0.14 +0.2 625,815 + MMP_RS03330 0.14 -0.3 625,860 - MMP_RS03330 0.21 +0.6 625,909 - MMP_RS03330 0.30 +0.0 625,915 + MMP_RS03330 0.31 +0.5 625,986 + MMP_RS03330 0.43 -0.6 625,993 - MMP_RS03330 0.44 -0.4 625,993 - MMP_RS03330 0.44 +1.2 625,994 + MMP_RS03330 0.44 -1.3 626,088 - MMP_RS03330 0.60 -0.3 626,110 + MMP_RS03330 0.64 +1.6 626,208 - MMP_RS03330 0.80 -0.4 626,209 + MMP_RS03330 0.81 -1.3 626,242 + MMP_RS03330 0.86 -2.3 626,294 - -2.6 626,319 + -3.9 626,375 + -1.9 626,396 + +0.6 626,551 + -2.3 626,563 - -0.2 626,581 + -3.5 626,763 - MMP_RS03335 0.24 -2.4 626,764 + MMP_RS03335 0.24 -1.9 626,796 + MMP_RS03335 0.27 -0.1 627,036 - MMP_RS03335 0.47 -0.6 627,037 + MMP_RS03335 0.47 -0.9 627,055 - MMP_RS03335 0.48 -2.2 627,136 + MMP_RS03335 0.55 -0.8 627,253 - MMP_RS03335 0.65 +0.2 627,354 - MMP_RS03335 0.73 -1.5 627,475 + MMP_RS03335 0.84 +1.3 627,653 + -1.1 627,726 - +0.1 627,971 - MMP_RS03340 0.41 +0.2 628,394 - -0.9 628,441 + +0.6 628,506 - +0.4 628,544 - -1.7 628,551 - -0.3 628,559 - -1.2 628,559 - -0.6 628,561 - -1.3 628,579 - -1.1
Or see this region's nucleotide sequence