Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02475

Experiment: Formate with Bacitracin 15.6 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02465 and MMP_RS02470 are separated by 365 nucleotidesMMP_RS02470 and MMP_RS02475 are separated by 154 nucleotidesMMP_RS02475 and MMP_RS02480 are separated by 98 nucleotidesMMP_RS02480 and MMP_RS02485 are separated by 2 nucleotidesMMP_RS02485 and MMP_RS02490 overlap by 14 nucleotides MMP_RS02465: MMP_RS02465 - hypothetical protein, at 462,521 to 463,246 _RS02465 MMP_RS02470: MMP_RS02470 - helix-turn-helix transcriptional regulator, at 463,612 to 463,974 _RS02470 MMP_RS02475: MMP_RS02475 - hypothetical protein, at 464,129 to 464,380 _RS02475 MMP_RS02480: MMP_RS02480 - hypothetical protein, at 464,479 to 464,997 _RS02480 MMP_RS02485: MMP_RS02485 - DUF2080 family transposase-associated protein, at 465,000 to 465,224 _RS02485 MMP_RS02490: MMP_RS02490 - hypothetical protein, at 465,211 to 465,405 _RS02490 Position (kb) 464 465Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 463.140 kb on - strand, within MMP_RS02465at 463.145 kb on - strand, within MMP_RS02465at 463.275 kb on - strandat 463.276 kb on + strandat 463.276 kb on + strandat 463.277 kb on - strandat 463.375 kb on + strandat 463.380 kb on - strandat 463.387 kb on - strandat 463.388 kb on + strandat 463.404 kb on - strandat 463.404 kb on - strandat 463.457 kb on - strandat 463.457 kb on - strandat 463.457 kb on - strandat 463.476 kb on - strandat 463.481 kb on - strandat 463.499 kb on - strandat 463.509 kb on - strandat 463.510 kb on + strandat 463.517 kb on - strandat 463.517 kb on - strandat 463.527 kb on - strandat 463.531 kb on - strandat 463.532 kb on + strandat 463.532 kb on + strandat 463.547 kb on - strandat 463.551 kb on - strandat 463.551 kb on - strandat 463.551 kb on - strandat 463.637 kb on + strandat 463.676 kb on + strand, within MMP_RS02470at 463.819 kb on - strand, within MMP_RS02470at 464.000 kb on + strandat 464.009 kb on - strandat 464.009 kb on - strandat 464.009 kb on - strandat 464.010 kb on + strandat 464.011 kb on - strandat 464.012 kb on + strandat 464.032 kb on - strandat 464.103 kb on + strandat 464.103 kb on + strandat 464.105 kb on - strandat 464.105 kb on - strandat 464.105 kb on - strandat 464.106 kb on + strandat 464.106 kb on + strandat 464.198 kb on - strand, within MMP_RS02475at 464.199 kb on + strand, within MMP_RS02475at 464.236 kb on - strand, within MMP_RS02475at 464.364 kb on + strandat 464.455 kb on - strandat 464.676 kb on + strand, within MMP_RS02480at 464.825 kb on - strand, within MMP_RS02480at 465.306 kb on - strand, within MMP_RS02490at 465.306 kb on - strand, within MMP_RS02490at 465.307 kb on + strand, within MMP_RS02490

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate with Bacitracin 15.6 uM
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463,140 - MMP_RS02465 0.85 +1.2
463,145 - MMP_RS02465 0.86 +1.0
463,275 - +0.2
463,276 + -0.6
463,276 + +0.9
463,277 - -0.5
463,375 + -0.7
463,380 - -0.6
463,387 - +1.1
463,388 + +2.7
463,404 - +0.4
463,404 - -0.9
463,457 - +0.8
463,457 - -0.8
463,457 - +0.0
463,476 - +0.0
463,481 - -0.9
463,499 - -0.3
463,509 - -0.2
463,510 + -0.8
463,517 - +1.2
463,517 - -1.9
463,527 - +0.5
463,531 - -1.0
463,532 + -2.3
463,532 + -0.7
463,547 - -0.2
463,551 - -1.2
463,551 - -2.6
463,551 - -0.7
463,637 + +1.2
463,676 + MMP_RS02470 0.18 -0.2
463,819 - MMP_RS02470 0.57 +2.1
464,000 + +1.8
464,009 - +4.0
464,009 - +1.2
464,009 - +0.2
464,010 + +2.9
464,011 - +0.8
464,012 + +3.0
464,032 - +0.0
464,103 + -0.5
464,103 + -0.3
464,105 - -0.2
464,105 - -0.3
464,105 - +0.2
464,106 + -2.3
464,106 + -0.3
464,198 - MMP_RS02475 0.27 -1.1
464,199 + MMP_RS02475 0.28 -0.5
464,236 - MMP_RS02475 0.42 -0.9
464,364 + +0.2
464,455 - -1.1
464,676 + MMP_RS02480 0.38 -0.9
464,825 - MMP_RS02480 0.67 +0.1
465,306 - MMP_RS02490 0.49 +0.2
465,306 - MMP_RS02490 0.49 -0.2
465,307 + MMP_RS02490 0.49 -0.4

Or see this region's nucleotide sequence