Experiment: Formate with Bacitracin 15.6 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00475 and MMP_RS00480 are separated by 317 nucleotides MMP_RS00480 and MMP_RS00485 are separated by 51 nucleotides
MMP_RS00475: MMP_RS00475 - Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain, at 93,984 to 95,063
_RS00475
MMP_RS00480: MMP_RS00480 - hypothetical protein, at 95,381 to 96,079
_RS00480
MMP_RS00485: MMP_RS00485 - mRNA surveillance protein pelota, at 96,131 to 97,177
_RS00485
Position (kb) 95
96
97 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 94.413 kb on + strand, within MMP_RS00475 at 94.485 kb on - strand, within MMP_RS00475 at 94.720 kb on - strand, within MMP_RS00475 at 94.824 kb on - strand, within MMP_RS00475 at 94.824 kb on - strand, within MMP_RS00475 at 94.824 kb on - strand, within MMP_RS00475 at 94.825 kb on + strand, within MMP_RS00475 at 94.877 kb on - strand, within MMP_RS00475 at 94.877 kb on - strand, within MMP_RS00475 at 94.928 kb on + strand, within MMP_RS00475 at 95.071 kb on - strand at 95.071 kb on - strand at 95.101 kb on - strand at 95.179 kb on - strand at 95.227 kb on + strand at 95.272 kb on + strand at 95.281 kb on + strand at 95.315 kb on - strand at 95.315 kb on - strand at 95.315 kb on - strand at 95.348 kb on - strand at 95.373 kb on - strand at 95.445 kb on - strand at 95.452 kb on + strand, within MMP_RS00480 at 95.466 kb on - strand, within MMP_RS00480 at 95.475 kb on - strand, within MMP_RS00480 at 95.475 kb on - strand, within MMP_RS00480 at 95.513 kb on - strand, within MMP_RS00480 at 95.513 kb on - strand, within MMP_RS00480 at 95.514 kb on + strand, within MMP_RS00480 at 95.563 kb on - strand, within MMP_RS00480 at 95.804 kb on - strand, within MMP_RS00480 at 95.856 kb on + strand, within MMP_RS00480 at 95.970 kb on + strand, within MMP_RS00480 at 96.002 kb on - strand, within MMP_RS00480 at 96.009 kb on - strand, within MMP_RS00480 at 96.009 kb on - strand, within MMP_RS00480 at 96.055 kb on - strand at 96.055 kb on - strand at 96.055 kb on - strand at 96.056 kb on + strand at 96.058 kb on - strand at 96.058 kb on - strand at 96.058 kb on - strand at 96.058 kb on - strand at 96.060 kb on - strand at 96.072 kb on - strand at 96.126 kb on + strand at 96.132 kb on - strand at 96.133 kb on + strand at 96.534 kb on - strand at 96.940 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with Bacitracin 15.6 uM remove 94,413 + MMP_RS00475 0.40 -0.3 94,485 - MMP_RS00475 0.46 -1.0 94,720 - MMP_RS00475 0.68 +0.8 94,824 - MMP_RS00475 0.78 -0.3 94,824 - MMP_RS00475 0.78 +1.9 94,824 - MMP_RS00475 0.78 -2.5 94,825 + MMP_RS00475 0.78 -1.5 94,877 - MMP_RS00475 0.83 -0.2 94,877 - MMP_RS00475 0.83 -0.9 94,928 + MMP_RS00475 0.87 -3.4 95,071 - -0.8 95,071 - -0.4 95,101 - +0.2 95,179 - +0.5 95,227 + -0.3 95,272 + -0.5 95,281 + +0.0 95,315 - -1.0 95,315 - -1.6 95,315 - -0.6 95,348 - +0.9 95,373 - -0.6 95,445 - -1.1 95,452 + MMP_RS00480 0.10 -1.2 95,466 - MMP_RS00480 0.12 -1.9 95,475 - MMP_RS00480 0.13 -1.9 95,475 - MMP_RS00480 0.13 -0.6 95,513 - MMP_RS00480 0.19 +0.5 95,513 - MMP_RS00480 0.19 -0.5 95,514 + MMP_RS00480 0.19 +0.9 95,563 - MMP_RS00480 0.26 -1.6 95,804 - MMP_RS00480 0.61 -1.0 95,856 + MMP_RS00480 0.68 -1.4 95,970 + MMP_RS00480 0.84 -1.0 96,002 - MMP_RS00480 0.89 +0.4 96,009 - MMP_RS00480 0.90 -0.4 96,009 - MMP_RS00480 0.90 -1.2 96,055 - +0.3 96,055 - +0.4 96,055 - +0.3 96,056 + +1.6 96,058 - -1.4 96,058 - -0.7 96,058 - +0.6 96,058 - +0.2 96,060 - -0.8 96,072 - -1.0 96,126 + -1.0 96,132 - -0.6 96,133 + +0.7 96,534 - +0.4 96,940 - +3.9
Or see this region's nucleotide sequence